FMO12693.5prime Sequence
824 bp (824 high quality bases) assembled on 2013-01-17
> FMO12693.5prime
CAGTCGACATGGCGGATCCAGAGCGACAAAGCCTGATCAACAAGGACGAC
GGCAATGGCTACAATTCCGTGGACGCCGTGGACGAGGGTGCCGATAATCC
CGGCAGCAACTCATCGGTGGCCACAAACGAGGACGGCAATGGAGCACCGA
CCGCAGTGCCTTGCATTGGACCCGATGAGCTGCCGCCGCCGTATCAGCAG
AGTACCAACACCGGAGGCGTCCCGATGGTCACCTGTCGGGTATGTCAACA
CATGATTGACATCACCACGAAGCGGGAGCAGCACGTGGTCAAGTGCACCC
ACTGCAATGAGGCTACTCCCATTCGGAACGCTCCAGCGGGCAAGAAGTAT
GTTCGCTGCCCATGCAACTGTTTGTTAATCTGCAAGAGCTCGTCGCAGCG
AATCGCTTGTCCAAGGCCCAATTGCAAGAGGATCATCAACCTGGCCCCAA
GTCCCGTCACCCCGCCCGTGCCAACCATGCCGGGCATGTGCCGCGTCACT
TGTGGCCACTGTTCGGACACGTTTTTGTTCAACACGTATCACAACGCCTT
GGCCCGGTGTCCACACTGCAGGAAGGTCTCATCGGTGGGCTCGCGCTTTG
CCAACAGCCGCGCCGTGATGTTCGCCATCGTGGCGCTGGTGTTCCTCATC
ACAGGCATCGCTGTAACTATCGGCACATACTCGATTGCTTCGGATCATGG
TGGCATGTACTTCCTCTACGTGGCGCTGTTCGTGATTTCGGGTTGCATGC
TGGCCAGGTCCGCCTACTATTTCCGCCTTAAAGTGAGCGCCATCGATGGG
CCAATGGCCAGCTTTCTAGACCAT
FMO12693.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6707-RC | 2135 | CG6707-RC | 382..1179 | 9..806 | 3990 | 100 | Plus |
| CG6707-RA | 1954 | CG6707-RA | 201..998 | 9..806 | 3990 | 100 | Plus |
| CG6707-RB | 1666 | CG6707-RB | 39..710 | 135..806 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9896179..9896388 | 527..318 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 9896454..9896636 | 317..135 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 9895957..9896123 | 693..527 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 9897928..9898055 | 136..9 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 9895763..9895877 | 806..692 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:08 has no hits.
FMO12693.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-17 11:07:44 Download gff for
FMO12693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6707-RA | 210..1023 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:47 Download gff for
FMO12693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6707-RA | 192..1005 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:30 Download gff for
FMO12693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6707-RA | 192..1005 | 1..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:30 Download gff for
FMO12693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9895756..9895876 | 693..813 | 97 | <- | Minus |
| 3L | 9895958..9896122 | 528..692 | 100 | <- | Minus |
| 3L | 9896179..9896388 | 318..527 | 100 | <- | Minus |
| 3L | 9896454..9896635 | 136..317 | 100 | <- | Minus |
| 3L | 9897929..9898063 | 1..135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:47 Download gff for
FMO12693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9888856..9888976 | 693..813 | 97 | <- | Minus |
| arm_3L | 9889058..9889222 | 528..692 | 100 | <- | Minus |
| arm_3L | 9889279..9889488 | 318..527 | 100 | <- | Minus |
| arm_3L | 9889554..9889735 | 136..317 | 100 | <- | Minus |
| arm_3L | 9891029..9891163 | 1..135 | 97 | | Minus |
