Clone FMO12701 Report

Search the DGRC for FMO12701

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:1
Vector:pMK33-CFH-BD
Associated Gene/Transcriptfd3F-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12701.5prime Sequence

1156 bp (1044 high quality bases) assembled on 2013-01-29

> FMO12701.5prime
CAGTCGACATGTGGCTGAAATCCAAAACCAACCACCGCAAAACAAGCAGG
CCAAAGAAACCACCGTTCACCTACACGGAGCTCATCGAATACGCCCTCGA
GGATAAGGGTGAGCTGACTGTGTCGGGCATATACCAATGGATATCCGATC
GTTTCCCCTACTACAAGTCGAATGATGACCGCTGGAAGAACTCCGTTCGA
CATAATCTATCGATTAACCCACATTTTCGGAAGGGAGTTAAAGCGCCCCA
AGGAGCCGGTCACCTGTGGGCCATTTCCAGCGGAGATTCCGCCGAGAATG
TTCTGGCCTGGGAGCATAAGAAGCAGCGGCTGGATTTGTTCTTCAAAATG
GAGTCGATTAACCGTGAGCGTATACAGCAGCATCAGCAACAGCAGCAACT
GCAGCAGCATCAGCAGCAACACCAGCAGCACTCGCCGCAACAGAAACAAC
ATTCGGCGGCACAGCAGCAACATATGCCACAGGCCAGTAGCTGCATGTAC
GATGAGGCGGCGGTGGCAGTTGCTACTCTCACCCAGGAAATGATGCAGAC
TAACAGCGGCGGTGGCAGCACTGAGACAAGCCAGCAGCAGCAGCAGCAGC
AGCAGCATCACCACCACCACAGCCACCAGAATCACCAAAATCACAATCAA
CACCACCAAAGACTGCTGCCCTTCAACGATCTGTTGAGCGACGATGAGCT
GCGAAAGACGGCGGGTCAAATACTGAATGGCATCCATCGCGAGGTGGAAG
TACAGTCGGTCAACTCTATCATCAGCACCTACCACGATGTCCTGTTGGAT
AATGACTATTTGAATCCCATACACAAGGACGTGGTTGTTACGGAAAGTGT
CCTACGGCAGCAGCATGGCACCAACTTGGGCGGAGGCAATAACAACAAAA
TAACCAAATGGGCGGCAATAGCCACATGGGTGGCGGCAACTCGCAGTACT
ACATCACCGAAATTGATCCCATGAGCTCGCATCAGATGTCGCACCAGTGA
GCCTCGAGAGAGTACTCTTCAGCGACGAGTTCAACCTTACTACTTTGCTA
TAAATCCGGGTAGCGAAATCGTCGCTGCAGCCTTCTAGAACATCGTGGCC
GCCGGCCAAGTATGTCTATCTAATCTTAATCTATCTATCAACTAGGCTAG
GAATCT

FMO12701.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
fd3F-RC 3007 CG44123-RC 1435..2473 50..1076 4830 98.5 Plus
Crg-1-RB 1230 CG32788-RB 414..550 9..145 685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3809651..3810141 314..804 2425 99.6 Plus
X 23542271 X 3809422..3809593 146..317 860 100 Plus
X 23542271 X 3810222..3810506 804..1076 825 90.9 Plus
X 23542271 X 3795092..3795228 9..145 685 100 Plus
X 23542271 X 3804185..3804321 9..145 685 100 Plus
Blast to na_te.dros performed 2014-11-28 18:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..7030 371..682 330 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2549 374..607 301 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2557 374..653 294 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2666 374..659 288 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6975 394..667 275 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6764..7059 375..664 265 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..7027 375..658 259 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6922 375..482 233 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2714..2998 367..652 219 59.6 Plus
roo 9092 roo DM_ROO 9092bp 1030..1113 345..430 200 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2994 416..663 193 57.9 Plus
roo 9092 roo DM_ROO 9092bp 1047..1156 389..505 181 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2572..2860 370..675 178 55.9 Plus

FMO12701.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:53 Download gff for FMO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
fd3F-RB 480..1571 1..1081 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:19 Download gff for FMO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
fd3F-RC 1429..2478 43..1082 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:41 Download gff for FMO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
fd3F-RC 1429..2478 43..1082 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:41 Download gff for FMO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3804180..3804321 1..145 97 -> Plus
X 3809422..3809593 146..317 100 -> Plus
X 3809655..3810141 318..804 99 -> Plus
X 3810223..3810511 805..1082 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:19 Download gff for FMO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3698213..3698354 1..145 97 -> Plus
arm_X 3703455..3703626 146..317 100 -> Plus
arm_X 3703688..3704174 318..804 99 -> Plus
arm_X 3704256..3704544 805..1082 93   Plus