FMO12701.5prime Sequence
1156 bp (1044 high quality bases) assembled on 2013-01-29
> FMO12701.5prime
CAGTCGACATGTGGCTGAAATCCAAAACCAACCACCGCAAAACAAGCAGG
CCAAAGAAACCACCGTTCACCTACACGGAGCTCATCGAATACGCCCTCGA
GGATAAGGGTGAGCTGACTGTGTCGGGCATATACCAATGGATATCCGATC
GTTTCCCCTACTACAAGTCGAATGATGACCGCTGGAAGAACTCCGTTCGA
CATAATCTATCGATTAACCCACATTTTCGGAAGGGAGTTAAAGCGCCCCA
AGGAGCCGGTCACCTGTGGGCCATTTCCAGCGGAGATTCCGCCGAGAATG
TTCTGGCCTGGGAGCATAAGAAGCAGCGGCTGGATTTGTTCTTCAAAATG
GAGTCGATTAACCGTGAGCGTATACAGCAGCATCAGCAACAGCAGCAACT
GCAGCAGCATCAGCAGCAACACCAGCAGCACTCGCCGCAACAGAAACAAC
ATTCGGCGGCACAGCAGCAACATATGCCACAGGCCAGTAGCTGCATGTAC
GATGAGGCGGCGGTGGCAGTTGCTACTCTCACCCAGGAAATGATGCAGAC
TAACAGCGGCGGTGGCAGCACTGAGACAAGCCAGCAGCAGCAGCAGCAGC
AGCAGCATCACCACCACCACAGCCACCAGAATCACCAAAATCACAATCAA
CACCACCAAAGACTGCTGCCCTTCAACGATCTGTTGAGCGACGATGAGCT
GCGAAAGACGGCGGGTCAAATACTGAATGGCATCCATCGCGAGGTGGAAG
TACAGTCGGTCAACTCTATCATCAGCACCTACCACGATGTCCTGTTGGAT
AATGACTATTTGAATCCCATACACAAGGACGTGGTTGTTACGGAAAGTGT
CCTACGGCAGCAGCATGGCACCAACTTGGGCGGAGGCAATAACAACAAAA
TAACCAAATGGGCGGCAATAGCCACATGGGTGGCGGCAACTCGCAGTACT
ACATCACCGAAATTGATCCCATGAGCTCGCATCAGATGTCGCACCAGTGA
GCCTCGAGAGAGTACTCTTCAGCGACGAGTTCAACCTTACTACTTTGCTA
TAAATCCGGGTAGCGAAATCGTCGCTGCAGCCTTCTAGAACATCGTGGCC
GCCGGCCAAGTATGTCTATCTAATCTTAATCTATCTATCAACTAGGCTAG
GAATCT
FMO12701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd3F-RC | 3007 | CG44123-RC | 1435..2473 | 50..1076 | 4830 | 98.5 | Plus |
Crg-1-RB | 1230 | CG32788-RB | 414..550 | 9..145 | 685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3809651..3810141 | 314..804 | 2425 | 99.6 | Plus |
X | 23542271 | X | 3809422..3809593 | 146..317 | 860 | 100 | Plus |
X | 23542271 | X | 3810222..3810506 | 804..1076 | 825 | 90.9 | Plus |
X | 23542271 | X | 3795092..3795228 | 9..145 | 685 | 100 | Plus |
X | 23542271 | X | 3804185..3804321 | 9..145 | 685 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..7030 | 371..682 | 330 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2549 | 374..607 | 301 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2557 | 374..653 | 294 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2666 | 374..659 | 288 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6975 | 394..667 | 275 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..7059 | 375..664 | 265 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7027 | 375..658 | 259 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6922 | 375..482 | 233 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2714..2998 | 367..652 | 219 | 59.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1030..1113 | 345..430 | 200 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2994 | 416..663 | 193 | 57.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1047..1156 | 389..505 | 181 | 66.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2572..2860 | 370..675 | 178 | 55.9 | Plus |
FMO12701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:53 Download gff for
FMO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd3F-RB | 480..1571 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:19 Download gff for
FMO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd3F-RC | 1429..2478 | 43..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:41 Download gff for
FMO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd3F-RC | 1429..2478 | 43..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:41 Download gff for
FMO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3804180..3804321 | 1..145 | 97 | -> | Plus |
X | 3809422..3809593 | 146..317 | 100 | -> | Plus |
X | 3809655..3810141 | 318..804 | 99 | -> | Plus |
X | 3810223..3810511 | 805..1082 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:19 Download gff for
FMO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3698213..3698354 | 1..145 | 97 | -> | Plus |
arm_X | 3703455..3703626 | 146..317 | 100 | -> | Plus |
arm_X | 3703688..3704174 | 318..804 | 99 | -> | Plus |
arm_X | 3704256..3704544 | 805..1082 | 93 | | Plus |