FMO12703.5prime Sequence
1142 bp (1048 high quality bases) assembled on 2013-01-29
> FMO12703.5prime
CAGTCGACATGAGCACGAACGTTGTTGTGAGCATGGAGGAGAAGGCGGTG
GCCGACGACCTGCCGTACTTCCCGGAGAAGTTTCCGGGCAAGGTGTGCTG
TTTATGCAATCTCGGCGAGAAGAGTGCCTTGGGCCAGGGCGAGATTCTAC
AACTGAAGGCGCCCGCGCCCGCCGAGATCAAGGATAAATATCCGACGGAT
CGGCTGAGGGAGGACGGATCCAGGCTGTTATACGGGCCTAAGCAGGCCGC
TTCTAGTTCGGGCGATTGTCACTACGAGCTGGACAAGATTGGACAGCCGG
ACGTCGTGCATCCCGCCGAATTTCTTGACGAGGGGTTCGTCTACGTGCAC
CGCATGTGCATCATGTGGTCGCTGCGCAAAAGTCAGATAAGCGATGCAGA
TGGCGCGTACTTTGCCACCCACTTCGCGGAGTTCCTGGAGCAAAAGTGCA
ACTTTTGTGGACGCTACGGGGCCTCCATCAACTGCAAGATGAACTGCCGC
CAGGTGCACCATTGGCCGTGTGCCGCCGCTGCTGGGTGCCTTCTGATCCT
CGAGAGCTTTACGGTCTTCTGCACGGAACATTTGAGCCAGGTGCCTGTGA
TATGCAGCGACAATAATGTGGAGTGTCTGTCCTGCTCCTCGCTGGGGGAT
CTGTCCAAGCTGATCATGTGTAGTACCTGCGGAGACCACTTTCATTCGAC
CTGCATTGGTCTGGCCAATTTGCCGGATACGCGTTCTGGGTGGAACTGCG
CCCGTTGCACAAAATGCCAGATTTGCAGGCAGCAAGACTCGAACGACACC
AAGTACGTTAAGTGTGAGCAATGCCAGAAGACTTACCACGCCTCCTGCTT
GCGACCAGTTATCTCAGCCATCCCCAAATATGGCTGGAAGTGCAATCGCT
GTCGCGTCTGTACGGATTGTGGTTCAAGAACTCCTGCGGCGGCAGCTCCT
CCCCGCTGGCATAGCCACTACACAATCTGCGATTCGTGCTATCAGCAGCG
GAACAGGGCTTTTCCTGCCCGATTTGCCAGAAGCGTACAGGCAGCATCCG
CACAAGAAATGTCCAGTGCAGCTGGTGCACCAATTGGCACAGGTACGGGT
GACGAGAGGCGGATTACGGCCTTACCCAGAGAGAGGACCAAC
FMO12703.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpt-RB | 4596 | CG5591-RB | 110..1232 | 9..1122 | 5230 | 98.4 | Plus |
| Lpt-RA | 4608 | CG5591-RA | 110..1232 | 9..1122 | 5230 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23898670..23899265 | 9..604 | 2980 | 100 | Plus |
| 2R | 25286936 | 2R | 23899510..23899680 | 726..896 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 23899324..23899446 | 604..726 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 23899744..23899880 | 897..1032 | 540 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:42 has no hits.
FMO12703.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:54 Download gff for
FMO12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5591-RA | 83..1186 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:23 Download gff for
FMO12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpt-RA | 101..1204 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:45 Download gff for
FMO12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpt-RA | 101..1204 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:45 Download gff for
FMO12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23898661..23899264 | 1..603 | 99 | -> | Plus |
| 2R | 23899324..23899446 | 604..726 | 100 | -> | Plus |
| 2R | 23899511..23899680 | 727..896 | 100 | -> | Plus |
| 2R | 23899744..23899934 | 897..1083 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:23 Download gff for
FMO12703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19786184..19786787 | 1..603 | 99 | -> | Plus |
| arm_2R | 19786847..19786969 | 604..726 | 100 | -> | Plus |
| arm_2R | 19787034..19787203 | 727..896 | 100 | -> | Plus |
| arm_2R | 19787267..19787457 | 897..1083 | 94 | | Plus |
