Clone FMO12705 Report

Search the DGRC for FMO12705

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:5
Vector:pMK33-CFH-BD
Associated Gene/Transcriptpdfr-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12705.5prime Sequence

1104 bp (983 high quality bases) assembled on 2013-01-29

> FMO12705.5prime
CAATCGACATGACCCTCCTGTCGAACATTCTCGACTGCGGAGGCTGTATT
TCCGCCCAGCGCTTCACCCGCCTGCTGCGCCAGTCCGGCTCATCAGGACC
ATCCCCATCTGCACCGACGGCCGGAACATTTGAATCAAAATCCATGCTGG
AGCCAACATCCTCGCACAGCCTGGCGACCGGACGCGTGCCACTACTGCAC
GATTTCGATGCCTCGACAACGGAATCGCCGGGAACGTATGTCCTCGACGG
TGTCGCCAGGGTGGCCCAATTGGCCCTGGAGCCCACCGTCATGGACGCAC
TGCCCGATTCGGACACGGAACAGGTTCTCGGTAATCTCAACAGCAGCGCG
CCCTGAAATCTAACGCTTGCGTCGGCAGCGGCCACCAATTTCGAGAACTG
CTCGGCGCTTTTTGTCAATTACACCCTACCACAAACAGGACTCTACTGCA
ATTGGACCTGGGACACATTGCTCTGCTGGCCACCCACTCCGGCTGGAGTC
CTTGCACGGATGAATTGTCCTGGCGGCTTTCATGGCGTAGATACGCGCAA
ATTCGCCATCCGAAAGTGTGAGCTGGATGGTCGATGGGGCAGCAGGCCAA
ATGCCACGGAGGTGAATCCGCCGGGATGGACGGACTACGGGCCGTGTTAC
AAGCCGGAGATTATCCGTCTCATGCAGCAGATGGGCAGCAAGGACTTCGA
TGCCTACATAGACATTGCCAGGAGGACTCGAACCCTGGAGATCGTGGGCC
TCTGCCTCTCCCTGTTCGCCCTTATAGTTTCCCTGCTGATCTTCTGCACA
TTTCGCTCGCTGCGAAACAATCGCACCAAGATCCACAAGAATCTTTTCGT
CGCCATGCTGCTGCAGGTGATCATTCGCCTGACCTTGTATCTCGACCAGT
TCCGGCGGGAAACAGGAGGCGGCCACCACACGAGTCTCTCTGTCATTGAG
ACACGCCCTATTTGTGCGAGCATCTATGTACTTCTGGAGTACGCTTCGTA
CGCATGTCATGTGATGTTCATTCGAGGGCCTTTACTGCACAACATGGTCA
CGTGCCCATTCCAGGCAGCTTTCCCTCAGTTCGTTCTCCGATCCGGCTGG
GGTG

FMO12705.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pdfr-RB 3230 CG13758-RB 669..1779 9..1104 4935 97.4 Plus
Pdfr-RA 2910 CG13758-RA 343..1453 9..1104 4935 97.4 Plus
Pdfr-RD 3239 CG13758-RD 251..1361 9..1104 4935 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2573001..2573431 9..439 2140 99.8 Plus
X 23542271 X 2574863..2575115 702..951 1090 97.2 Plus
X 23542271 X 2574472..2574624 550..702 765 100 Plus
X 23542271 X 2573498..2573610 437..549 565 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:38:54 has no hits.

FMO12705.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:55 Download gff for FMO12705.5prime
Subject Subject Range Query Range Percent Splice Strand
pdfr-RA 339..1440 1..1091 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:30 Download gff for FMO12705.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdfr-RD 247..1348 1..1091 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:52 Download gff for FMO12705.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdfr-RD 247..1348 1..1091 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:52 Download gff for FMO12705.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2572997..2573430 1..438 98 -> Plus
X 2573500..2573610 439..549 100 -> Plus
X 2574472..2574623 550..701 100 -> Plus
X 2574863..2575120 702..955 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:30 Download gff for FMO12705.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2467030..2467463 1..438 98 -> Plus
arm_X 2467533..2467643 439..549 100 -> Plus
arm_X 2468505..2468656 550..701 100 -> Plus
arm_X 2468896..2469153 702..955 97 -> Plus