FMO12705.5prime Sequence
1104 bp (983 high quality bases) assembled on 2013-01-29
> FMO12705.5prime
CAATCGACATGACCCTCCTGTCGAACATTCTCGACTGCGGAGGCTGTATT
TCCGCCCAGCGCTTCACCCGCCTGCTGCGCCAGTCCGGCTCATCAGGACC
ATCCCCATCTGCACCGACGGCCGGAACATTTGAATCAAAATCCATGCTGG
AGCCAACATCCTCGCACAGCCTGGCGACCGGACGCGTGCCACTACTGCAC
GATTTCGATGCCTCGACAACGGAATCGCCGGGAACGTATGTCCTCGACGG
TGTCGCCAGGGTGGCCCAATTGGCCCTGGAGCCCACCGTCATGGACGCAC
TGCCCGATTCGGACACGGAACAGGTTCTCGGTAATCTCAACAGCAGCGCG
CCCTGAAATCTAACGCTTGCGTCGGCAGCGGCCACCAATTTCGAGAACTG
CTCGGCGCTTTTTGTCAATTACACCCTACCACAAACAGGACTCTACTGCA
ATTGGACCTGGGACACATTGCTCTGCTGGCCACCCACTCCGGCTGGAGTC
CTTGCACGGATGAATTGTCCTGGCGGCTTTCATGGCGTAGATACGCGCAA
ATTCGCCATCCGAAAGTGTGAGCTGGATGGTCGATGGGGCAGCAGGCCAA
ATGCCACGGAGGTGAATCCGCCGGGATGGACGGACTACGGGCCGTGTTAC
AAGCCGGAGATTATCCGTCTCATGCAGCAGATGGGCAGCAAGGACTTCGA
TGCCTACATAGACATTGCCAGGAGGACTCGAACCCTGGAGATCGTGGGCC
TCTGCCTCTCCCTGTTCGCCCTTATAGTTTCCCTGCTGATCTTCTGCACA
TTTCGCTCGCTGCGAAACAATCGCACCAAGATCCACAAGAATCTTTTCGT
CGCCATGCTGCTGCAGGTGATCATTCGCCTGACCTTGTATCTCGACCAGT
TCCGGCGGGAAACAGGAGGCGGCCACCACACGAGTCTCTCTGTCATTGAG
ACACGCCCTATTTGTGCGAGCATCTATGTACTTCTGGAGTACGCTTCGTA
CGCATGTCATGTGATGTTCATTCGAGGGCCTTTACTGCACAACATGGTCA
CGTGCCCATTCCAGGCAGCTTTCCCTCAGTTCGTTCTCCGATCCGGCTGG
GGTG
FMO12705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdfr-RB | 3230 | CG13758-RB | 669..1779 | 9..1104 | 4935 | 97.4 | Plus |
Pdfr-RA | 2910 | CG13758-RA | 343..1453 | 9..1104 | 4935 | 97.4 | Plus |
Pdfr-RD | 3239 | CG13758-RD | 251..1361 | 9..1104 | 4935 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2573001..2573431 | 9..439 | 2140 | 99.8 | Plus |
X | 23542271 | X | 2574863..2575115 | 702..951 | 1090 | 97.2 | Plus |
X | 23542271 | X | 2574472..2574624 | 550..702 | 765 | 100 | Plus |
X | 23542271 | X | 2573498..2573610 | 437..549 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:54 has no hits.
FMO12705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:55 Download gff for
FMO12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pdfr-RA | 339..1440 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:30 Download gff for
FMO12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdfr-RD | 247..1348 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:52 Download gff for
FMO12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdfr-RD | 247..1348 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:52 Download gff for
FMO12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2572997..2573430 | 1..438 | 98 | -> | Plus |
X | 2573500..2573610 | 439..549 | 100 | -> | Plus |
X | 2574472..2574623 | 550..701 | 100 | -> | Plus |
X | 2574863..2575120 | 702..955 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:30 Download gff for
FMO12705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2467030..2467463 | 1..438 | 98 | -> | Plus |
arm_X | 2467533..2467643 | 439..549 | 100 | -> | Plus |
arm_X | 2468505..2468656 | 550..701 | 100 | -> | Plus |
arm_X | 2468896..2469153 | 702..955 | 97 | -> | Plus |