FMO12706.5prime Sequence
1158 bp (1067 high quality bases) assembled on 2013-01-29
> FMO12706.5prime
CAGTCGACATGAATTCCAAATCCGATTATGAAGCAGAAAAAGAAAAAAAG
CTGACCATAACAAATAGATTCGGGGACTCCCTGGAAAACTATGAACTATC
CAACGAGAGCGAGCACAAGACCCATGTATACCCGAAAAAGATTCCTAACA
GAAAAAACGGAATTTTAAAAAACACCGATGCCAACCATAGTGCCGTCGAT
AATCAACATCTTGAGGATGTGGATTTGGCAGACATTTTGGGCACAAATTG
GCCAAAACGAGCGGGACCAGCTGCAATGATCTTAAACAACAAAAGTAAAA
CGGATCCTAGTAATTCTGTAGACTTAATTTTAAAACCAGCCTCACCCATA
TTAAAAATAGAGCCGGAGGAACCTTTACGTTTTACAATCGCTGATTATCA
ACCTCTGATTGAAATACCTGGAACCGAGCTAGCGATTGGTTCCCTCGTCG
AAGTCTCGAATCCTGGAGTATGTGAAGATCTATATGGCGTTGTGAGATGG
ATAGGTATACCGCCTGGCCCGCAAAAAAACGTACTCGTCGGAATCGAGGT
AGAAGACGAATCCAACTTGAAAAATGTAGTGGCATCGGATGGGAGACACA
ATGGCGTACGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCA
GCCAACAGATGCACCGCTGACCGGCGATTTGCTGATGTAGATAATAGCAT
TTCTGCAAACAGAGTTTCTAGTAATCACGCAAAGAAATTTGGCGTCGCTG
ACTGTCCTGCCATATATGGCTCGATACCACCATTACAAATACACAATTCC
GATGAGCTTGCTAGCATATGTGGAAAGTTCAAAGGAATACAAGGACACCA
TAATTCCTGCTACCTTGATGCAACTCTATTTTCCATGTTCACTTTCACCA
GTGTTTCGATTCAATTCTGTACAGACGTCCGGGCCCACAGATATTCGAAA
TTACAGTGAGGTTCAAAAGGTTCTGCGCGATGAGATCGTCATCCAATGCG
AAAAACGTTTCGTTCGATCGATCGTGTGATGAAACTGCCCGAGCTCCTAG
ATCAGCTAGTTCGGTCAGCGTTTCACCTGCGAGGAAAAGATTCTGAAGTC
TATAGTTTGCTCTTTCCAAATATGCAGTGACGGTTCAGGCTAGACTCGCA
ATTCTATT
FMO12706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CYLD-RE | 2073 | CG5603-RE | 103..1201 | 9..1098 | 5210 | 98.8 | Plus |
| CYLD-RD | 2095 | CG5603-RD | 118..1216 | 9..1098 | 5210 | 98.8 | Plus |
| CYLD-RB | 1846 | CG5603-RB | 246..974 | 379..1098 | 3360 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10297705..10297936 | 610..379 | 1160 | 100 | Minus |
| 2L | 23513712 | 2L | 10298779..10298997 | 380..162 | 1065 | 99.1 | Minus |
| 2L | 23513712 | 2L | 10297431..10297607 | 786..610 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 10299044..10299204 | 169..9 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 10297217..10297370 | 939..787 | 720 | 99.4 | Minus |
| 2L | 23513712 | 2L | 10297001..10297156 | 1089..940 | 440 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:01 has no hits.
FMO12706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:56 Download gff for
FMO12706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CYLD-RA | 83..1218 | 9..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:34 Download gff for
FMO12706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CYLD-RD | 118..1253 | 9..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:57 Download gff for
FMO12706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CYLD-RD | 118..1253 | 9..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:57 Download gff for
FMO12706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10297216..10297370 | 787..939 | 98 | <- | Minus |
| 2L | 10297431..10297606 | 611..786 | 100 | <- | Minus |
| 2L | 10297705..10297936 | 379..610 | 100 | <- | Minus |
| 2L | 10298781..10298989 | 170..378 | 100 | <- | Minus |
| 2L | 10299044..10299204 | 9..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:34 Download gff for
FMO12706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10297216..10297370 | 787..939 | 98 | <- | Minus |
| arm_2L | 10297431..10297606 | 611..786 | 100 | <- | Minus |
| arm_2L | 10297705..10297936 | 379..610 | 100 | <- | Minus |
| arm_2L | 10298781..10298989 | 170..378 | 100 | <- | Minus |
| arm_2L | 10299044..10299204 | 9..169 | 100 | | Minus |
