Clone FMO12709 Report

Search the DGRC for FMO12709

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31957-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12709.5prime Sequence

503 bp (503 high quality bases) assembled on 2013-01-29

> FMO12709.5prime
CAGTCGACATGCACCGATCACACCCGAGTATCAGTCGTCGCAAGCATCTC
ATGAAGGAGATGATGGAGGACGACTACGCGCTGCCCACAGAAACTCAGCA
GATTGCGCGGGTCATCAGCAGTCGGGGCAACAATCTCCACGAGGTGGAGA
CCGTGGACGAAACGTTCCTTGTTTCGATGCCCAACAAATTCCGCAAGAGC
ATGTGGGTGAAACGTGGCGACTTTCTGCTGGTCGAACCGATTGAGGAGGG
CGATAAAGTCAAAGCCGAGATTTGCAAAATACTCACACCCGAACATATAA
AGGAATACACAAAAGCTGCAATTTGGCCGGATAAATTCACAAAGAAACCT
GTACAGGAGGAAGCCACCAGCCAAAACAAAGACGACTCCGATTTCGAGGA
TGATCTCCTGCCCAATACAAATCGGCCTGTAAATCGCGATTCCTCCGACG
AAGAGGAAGATGAGGAAACATCCAGCGAAGAGGACGCAAGCTTTCTAGAC
CAT

FMO12709.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31957-RB 885 CG31957-RB 124..600 9..485 2385 100 Plus
CG31957-RA 676 CG31957-RA 124..600 9..485 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3871556..3871870 485..171 1575 100 Minus
2L 23513712 2L 3872173..3872335 171..9 815 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:39:20 has no hits.

FMO12709.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:58 Download gff for FMO12709.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31957-RA 117..604 1..489 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:46 Download gff for FMO12709.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31957-RA 117..604 1..489 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:08 Download gff for FMO12709.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31957-RA 117..604 1..489 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:08 Download gff for FMO12709.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3871552..3871869 172..489 99 <- Minus
2L 3872173..3872339 1..171 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:46 Download gff for FMO12709.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3871552..3871869 172..489 99 <- Minus
arm_2L 3872173..3872339 1..171 97   Minus