FMO12710.5prime Sequence
1117 bp (1010 high quality bases) assembled on 2013-01-29
> FMO12710.5prime
CAGTCGACATGGCCACCACCAGTACGTCAAACATGTCCCGCAACGGTGGC
TTCTGTGGTGCATTGCAGCGGGCACCGCCGCCGATGCCGCCGACCCTCAT
CCGACGCCTGAGTAGCCGGGAGTGCTACGGAGTGGGCAAGGTGAAGGTCA
TGCTGCGGGTGGCGGACCGGGACAGGAACTCCGGCGGAACCGAGCCGGAC
TTTATGGCCCTGGACAAGAAGAAGCGACAGGTCACGCTCACCGATCCGAG
AACCGCGTGTCCGCCGCCCCAGGCTGCCCAGGAACGGGCGCCCATGGTGG
CCGCTCCCAAAATGTTTGCATTCGATAACCTCTTCACTGGCGAGGATAAG
CAGTCGGATGTGTGTGCATCGGCGCTGAGCGAAGTGATACCCGCCGTGCT
CGAAGGTTCCGATGGCTGCCTGCTGGCCATGGGATATCCCGCCACCGGCC
AGGCCCAAACGGTGTTGGGAGAACTGGGCGGTGGTAGTGGGAGTGGCAGT
GCCAGTGGCAGCGGTGTGGCGTGTTCCCTGGGAGCAGCACCCTGCGCCAT
CGCCTGGCTGTACAAGGGCATCCAGGAGAGGCGGCAGAAGAGCGGAGCAC
GCTTCTCGGTGCGGGTCAGTGCCGTGGGCGTCAGTGCCACCAAGCCGGAT
GCCCTATCGCAGGATTTGCTCATCTCGCATGCAGCCGAATCTGACGACTC
CCCGGGGATTTATTTGCGTGACGACTTCCTTGGCGGTCCAACGGAACTAC
GTGCACCCACCGCCGAGCGTGCGGCCCTTTTCCTCGACTCAGCGCTCGCC
GGACGCTTAAAAAGTTCCGGTTCCACGGCATCTGGGAGTTCTGGATGTGC
CGCCCCCTTGGAGTCCGCCCTCATCTTCACGCTGCACGTCTACCAGTACA
GCCTGTCCCGCAAGGGAGTGTGCTGGCGGTCGGAGCCGTTTACATATCAT
CGACCTGGGCGGGTGTGCGATCGCACGGGGGACTGCCGCTGTCGGGATCG
TACATACTGCTCGCCGATACTATCAGCCAGAGGTCATCCCCCACACATGG
ACCACCCCGCTGGAGCGGCTGCTCAAGACTGCCTTGTCCCATTTACCTGC
CATGTGGACTCCTGGGC
FMO12710.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14535-RB | 5826 | CG14535-RB | 517..1622 | 8..1107 | 5110 | 98.1 | Plus |
| CG14535-RA | 5606 | CG14535-RA | 297..1402 | 8..1107 | 5110 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7852957..7853302 | 353..8 | 1730 | 100 | Minus |
| 2L | 23513712 | 2L | 7851407..7851743 | 687..351 | 1685 | 100 | Minus |
| 2L | 23513712 | 2L | 7850309..7850540 | 918..687 | 1160 | 100 | Minus |
| 2L | 23513712 | 2L | 7849398..7849588 | 1107..921 | 360 | 87.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:13 has no hits.
FMO12710.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:51 Download gff for
FMO12710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14535-RA | 297..1412 | 8..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:06 Download gff for
FMO12710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14535-RA | 297..1412 | 8..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:32 Download gff for
FMO12710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14535-RA | 297..1412 | 8..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:32 Download gff for
FMO12710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7850306..7850539 | 688..920 | 99 | <- | Minus |
| 2L | 7851407..7851740 | 354..687 | 100 | <- | Minus |
| 2L | 7852957..7853302 | 8..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:06 Download gff for
FMO12710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7850306..7850539 | 688..920 | 99 | <- | Minus |
| arm_2L | 7851407..7851740 | 354..687 | 100 | <- | Minus |
| arm_2L | 7852957..7853302 | 8..353 | 100 | | Minus |
