FMO12713.5prime Sequence
959 bp (941 high quality bases) assembled on 2013-01-29
> FMO12713.5prime
CAGTCGACATGAGCCGACTCCTGGAGAAGCCCAACATCGCCATGTCCATC
AAGTCCACGGGTAGTCAGCTCTCGAGCACGATGACGACAGCCTCGGCGAC
GCTGTCCTCGGACCTGGACGATGCGGACACATCCCGCACCCAGCTGAGTC
CATCGGAAACATCTGGAGTAGTCCTCGTACCCGCCACTACAGTCACACCC
ATGCGCCAGAAAATCGACCAGGTGGTGATCAGCCTGATATCCGGAGCAGC
GGCGGGGGCGCTGGCCAAGACGGTCATCGCCCCGCTGGACCGCACAAAGA
TCAACTTCCAGATCCGCAACGATGTGCCCTTCTCGTTTCGAGCCTCGCTG
CGCTACCTGCAAAACACCTATGCCAACGAGGGCGTTTTGGCCCTGTGGCG
GGGGAACTCGGCCACGATGGCCAGAATCGTGCCCTACGCAGCCATTCAGT
TCACGGCCCACGAGCAGTGGCGTCGCATCCTGCACGTCGACAAGGACGGC
ACCAACACGAAAGGTCGTCGGTTTTTGGCTGGCTCCCTGGCGGGAATCAC
CTCACAGTCGCTGACGTATCCTCTGGACCTGGCACGCGCCCGCATGGCCG
TCACGGATCGGTATACTGGCTATCGGACGCTGCGACAAGTCTTCACCAAG
ATCTGGGTGGAGGAGGGTCCGCGGACGCTGTTCCGCGGCTACTGGGCGAC
CGTTCTCGGCGTGATTCCCTATGCGGGCACCTCCTTCTTCACCTACGAGA
CTCTTAAGCGGGAAATACTATGAAGTGGTCGGCAACAATAAACCCAATAC
TCTAGTCTCGCTGGCCTTTCGGTGCTTGCGGCTGGTGCCGCCGGGCAAAC
GGCCAGCTATCTATTGGACATTTGTGCCGGCCGAATAATGCAGACATTGC
GGGTGAACACGGCTGGCGAGATCGGTTACTCCACCCATCCTGGAGCTCCT
GTCCAGATT
FMO12713.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFA-RF | 2089 | CG4241-RF | 474..1403 | 9..945 | 4390 | 98.5 | Plus |
| att-ORFA-RC | 1898 | CG4241-RC | 283..1212 | 9..945 | 4390 | 98.5 | Plus |
| att-ORFA-RA | 1654 | CG4241-RA | 283..1212 | 9..945 | 4390 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20553896..20554199 | 505..202 | 1505 | 99.7 | Minus |
| 3R | 32079331 | 3R | 20553577..20553835 | 764..506 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 20554706..20554898 | 201..9 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 20553173..20553314 | 918..772 | 460 | 93.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:37 has no hits.
FMO12713.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:00 Download gff for
FMO12713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RA | 287..1235 | 1..953 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:58 Download gff for
FMO12713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RA | 273..1221 | 1..953 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:16 Download gff for
FMO12713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RA | 273..1221 | 1..953 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:16 Download gff for
FMO12713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20553570..20553835 | 506..772 | 99 | <- | Minus |
| 3R | 20553138..20553313 | 773..953 | 91 | <- | Minus |
| 3R | 20553896..20554199 | 202..505 | 99 | <- | Minus |
| 3R | 20554706..20554903 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:58 Download gff for
FMO12713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16378860..16379035 | 773..953 | 91 | <- | Minus |
| arm_3R | 16379292..16379557 | 506..772 | 99 | <- | Minus |
| arm_3R | 16379618..16379921 | 202..505 | 99 | <- | Minus |
| arm_3R | 16380428..16380625 | 1..201 | 98 | | Minus |
