FMO12715.5prime Sequence
1163 bp (1065 high quality bases) assembled on 2013-01-29
> FMO12715.5prime
CAGTCGACATGGGTCCCAACGGCACGGTACAGAATCAGAACCAACAGGGC
GGCGAGCAGTTGTCCAAGACAAATCTCTACATTCGCGGTCTGCAGCAGGG
CACAACCGACAAGGATCTAGTTAATATGTGTGCACAATACGGAACAATTA
TATCAACCAAGGCTATTTTAGATAAAACAACAAACAAATGTAAAGGTTAC
GGCTTCGTCGACTTCGAGCAGCCAGCCTTCGCCGAGTGCGCCGTAAAAGG
ATTGCAGGGGAAGGGCGTGCAAGCTCAGATGGCCAAAGTGGGTATCTGGG
TGCTTCATAGGCCGGCCATTCAACAGGAACAGGATCCCACAAATTTGTAT
ATTGCAAATTTGCCGCCCCACTTCAAAGAAACTGATCTGGAGGCAATGCT
ATCGAAATACGGACAAGTTGTTTCGACCAGAATATTGCGTGATCAGCAGA
TGAACTCCAAGGGCGTTGGCTTTGCCCGCATGGAGAGTCGCGAGAAGTGC
GAGCAAATCATTCAGATGTTCAATGGTAACACAATACCGGGTGCCAAAGA
TCCCCTGCTGGTTAAGTTTGCCGATGGCGGACCGAAAAAGAAGAATCTCT
TCAAGACGCCCGATCCGAATGCGCGTGCGTGGCGTGACGTCTCCGCGGAG
GGGATTCCCGTGGCCTACGACCCCACAATGCAGCAGAATGGAGTCAGCGT
GAACGTGCGCACACCCATCGGAGTGCCCTACTCCCGCTTCAGCGCCCCCC
AGGTGGGTGGCTATCCAGTGGCCGGCTCCCAATGGATTCCGGGTTACATG
ATGACTCAGGTAGATGATCAGACTTCGTATTCTCCACAGTACATGCAGAT
GGCAGCTGCCCTCCGCTGGGAGTAACCTCATACAAACCGGAGGCGGTTAA
CCAGGTGCAGCTCCGTGGCATCTCGATGATGGTTAGCGGTGATACGGGCG
TGCCATATGGAACAATGATGCCTCAGTTGGCACCCTGCAAATTGGCCACT
CTTTATATTAGTCAAACTTATCCATAATTATGCACCACCACAACTATTAA
TACCAACATGGCAATGACAGAATTCCGAACAGGCTAGCACAGCTGCATTC
ACGACAAGGCATACAACCAGTAATCCCATCAGCGCGCTCTAAGCAGCCTT
TAGACATCGTTTG
FMO12715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shep-RE | 2776 | CG32423-RE | 708..1824 | 7..1122 | 5215 | 98.2 | Plus |
shep-RG | 2541 | CG32423-RG | 473..1589 | 7..1122 | 5215 | 98.2 | Plus |
shep-RI | 4661 | CG32423-RI | 708..1818 | 7..1122 | 5115 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5163345..5163704 | 821..462 | 1785 | 99.7 | Minus |
3L | 28110227 | 3L | 5162967..5163151 | 1002..820 | 780 | 97.3 | Minus |
3L | 28110227 | 3L | 5163833..5163975 | 463..321 | 715 | 100 | Minus |
3L | 28110227 | 3L | 5170187..5170316 | 136..7 | 650 | 100 | Minus |
3L | 28110227 | 3L | 5166935..5167061 | 320..194 | 635 | 100 | Minus |
3L | 28110227 | 3L | 5168242..5168302 | 197..137 | 305 | 100 | Minus |
3L | 28110227 | 3L | 5162517..5162610 | 1098..1004 | 210 | 88.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:48 has no hits.
FMO12715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:02 Download gff for
FMO12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shep-RE | 699..1813 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:06 Download gff for
FMO12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shep-RG | 468..1582 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:22 Download gff for
FMO12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shep-RG | 468..1582 | 1..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:22 Download gff for
FMO12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5162967..5163149 | 822..1003 | 96 | <- | Minus |
3L | 5163345..5163703 | 463..821 | 99 | <- | Minus |
3L | 5163834..5163975 | 321..462 | 100 | <- | Minus |
3L | 5166935..5167059 | 196..320 | 100 | <- | Minus |
3L | 5168244..5168302 | 137..195 | 100 | <- | Minus |
3L | 5170187..5170321 | 1..136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:06 Download gff for
FMO12715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5156067..5156249 | 822..1003 | 96 | <- | Minus |
arm_3L | 5156445..5156803 | 463..821 | 99 | <- | Minus |
arm_3L | 5156934..5157075 | 321..462 | 100 | <- | Minus |
arm_3L | 5160035..5160159 | 196..320 | 100 | <- | Minus |
arm_3L | 5161344..5161402 | 137..195 | 100 | <- | Minus |
arm_3L | 5163287..5163421 | 1..136 | 97 | | Minus |