Clone FMO12715 Report

Search the DGRC for FMO12715

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:15
Vector:pMK33-CFH-BD
Associated Gene/Transcriptshep-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12715.5prime Sequence

1163 bp (1065 high quality bases) assembled on 2013-01-29

> FMO12715.5prime
CAGTCGACATGGGTCCCAACGGCACGGTACAGAATCAGAACCAACAGGGC
GGCGAGCAGTTGTCCAAGACAAATCTCTACATTCGCGGTCTGCAGCAGGG
CACAACCGACAAGGATCTAGTTAATATGTGTGCACAATACGGAACAATTA
TATCAACCAAGGCTATTTTAGATAAAACAACAAACAAATGTAAAGGTTAC
GGCTTCGTCGACTTCGAGCAGCCAGCCTTCGCCGAGTGCGCCGTAAAAGG
ATTGCAGGGGAAGGGCGTGCAAGCTCAGATGGCCAAAGTGGGTATCTGGG
TGCTTCATAGGCCGGCCATTCAACAGGAACAGGATCCCACAAATTTGTAT
ATTGCAAATTTGCCGCCCCACTTCAAAGAAACTGATCTGGAGGCAATGCT
ATCGAAATACGGACAAGTTGTTTCGACCAGAATATTGCGTGATCAGCAGA
TGAACTCCAAGGGCGTTGGCTTTGCCCGCATGGAGAGTCGCGAGAAGTGC
GAGCAAATCATTCAGATGTTCAATGGTAACACAATACCGGGTGCCAAAGA
TCCCCTGCTGGTTAAGTTTGCCGATGGCGGACCGAAAAAGAAGAATCTCT
TCAAGACGCCCGATCCGAATGCGCGTGCGTGGCGTGACGTCTCCGCGGAG
GGGATTCCCGTGGCCTACGACCCCACAATGCAGCAGAATGGAGTCAGCGT
GAACGTGCGCACACCCATCGGAGTGCCCTACTCCCGCTTCAGCGCCCCCC
AGGTGGGTGGCTATCCAGTGGCCGGCTCCCAATGGATTCCGGGTTACATG
ATGACTCAGGTAGATGATCAGACTTCGTATTCTCCACAGTACATGCAGAT
GGCAGCTGCCCTCCGCTGGGAGTAACCTCATACAAACCGGAGGCGGTTAA
CCAGGTGCAGCTCCGTGGCATCTCGATGATGGTTAGCGGTGATACGGGCG
TGCCATATGGAACAATGATGCCTCAGTTGGCACCCTGCAAATTGGCCACT
CTTTATATTAGTCAAACTTATCCATAATTATGCACCACCACAACTATTAA
TACCAACATGGCAATGACAGAATTCCGAACAGGCTAGCACAGCTGCATTC
ACGACAAGGCATACAACCAGTAATCCCATCAGCGCGCTCTAAGCAGCCTT
TAGACATCGTTTG

FMO12715.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
shep-RE 2776 CG32423-RE 708..1824 7..1122 5215 98.2 Plus
shep-RG 2541 CG32423-RG 473..1589 7..1122 5215 98.2 Plus
shep-RI 4661 CG32423-RI 708..1818 7..1122 5115 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5163345..5163704 821..462 1785 99.7 Minus
3L 28110227 3L 5162967..5163151 1002..820 780 97.3 Minus
3L 28110227 3L 5163833..5163975 463..321 715 100 Minus
3L 28110227 3L 5170187..5170316 136..7 650 100 Minus
3L 28110227 3L 5166935..5167061 320..194 635 100 Minus
3L 28110227 3L 5168242..5168302 197..137 305 100 Minus
3L 28110227 3L 5162517..5162610 1098..1004 210 88.5 Minus
Blast to na_te.dros performed on 2014-11-28 18:39:48 has no hits.

FMO12715.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:02 Download gff for FMO12715.5prime
Subject Subject Range Query Range Percent Splice Strand
shep-RE 699..1813 1..1115 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:06 Download gff for FMO12715.5prime
Subject Subject Range Query Range Percent Splice Strand
shep-RG 468..1582 1..1115 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:22 Download gff for FMO12715.5prime
Subject Subject Range Query Range Percent Splice Strand
shep-RG 468..1582 1..1115 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:22 Download gff for FMO12715.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5162967..5163149 822..1003 96 <- Minus
3L 5163345..5163703 463..821 99 <- Minus
3L 5163834..5163975 321..462 100 <- Minus
3L 5166935..5167059 196..320 100 <- Minus
3L 5168244..5168302 137..195 100 <- Minus
3L 5170187..5170321 1..136 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:06 Download gff for FMO12715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5156067..5156249 822..1003 96 <- Minus
arm_3L 5156445..5156803 463..821 99 <- Minus
arm_3L 5156934..5157075 321..462 100 <- Minus
arm_3L 5160035..5160159 196..320 100 <- Minus
arm_3L 5161344..5161402 137..195 100 <- Minus
arm_3L 5163287..5163421 1..136 97   Minus