FMO12716.5prime Sequence
1167 bp (1030 high quality bases) assembled on 2013-01-29
> FMO12716.5prime
CAGTCGACATGTCGCGCCAATTGAGTTTCAATCCGCAGAAAGAATATGAG
TTGATCGAGTACCCCGGCCGAGTGGTAAATCCCGATCGGATGATAGCCAC
TCTGGGCGGCATCATCAATGTGTCTAAGGTTTTGGGCGACGAAGTGAAAC
GATTGGCGTTGCACTTCCATCCGGAGAATCCCTACAACAAACCCACTTTT
GGGGACTGCACGGATAAGACTGGTGTCCTGCTATCCATAACCGTGAGGCG
CCACAAAAAGGACAAGCAACGGCCTCCGGAATATTTTGTGCGGGTGTTGG
GCCACTGCAGCAGGAGCTTCACCTTTGAAACGCTTTGTGATTTCCAATAC
CTACCCCTCTGGTCAACTCCCAAAAGTGACAACGCAAATGCTGCCCAGGA
GCTCACGTACGCTTTGGACCAGTTGAAACCCAAAAACACCACCGACTTGG
ACTACTTTAAACGTCGCCACAGCCAGTTGCTGGCGCTGCCCGAATTGTTC
ACCCACGTGGACACTGTCTATGCGGGCACGTATCGCATCGATCCCTCAGA
AGACGGCCAACATGAGGTGCTGGGCGTGCAGTCCAAGTCCTCCTACGACA
ACCAGGGCGTGGTCTCGTTCAACATGGTGGACAGCTTTCCCACCCAGGCA
GACTCCCAAAACCTTAAACGACTCAAGGTCAAGTACGTTTCGGATGAGCA
GCTGGCATTGGTCAAAAAACTTTTCGATGACTGCCCAATTTGGACCCGAA
TCGCGCTGCAATATGAATCGGGTTTGACCAACGACAAACTCAAGTGCATC
ACTCCATCGCTGGCATTTTACTTTAGCAACGGCCCGTGGCGCACTTTGTA
TGTTCGCTTCGGCTACGATCCCCGCAAGGACTTCAATAGTCGCTACTATC
AGACTTTCGACTTCCGACTCCGATTCAGCACTGGTCTCTCCGATTTCGTG
TATGCTAAGAAGTTCGTAAGCAACGGAGGGCGGCGAACGCCTCCATTCGC
CCCCAATCGAGGATCGAGTTCTCTGATTTGGTTCAGGACCTTTGACTATC
CCTACTTCGAATGAGAGACCAAAGCCTGGCGCCGCTTCAAGCATGCATGG
CTGCGGCTACATTGCAAGGTCCGGTATGGACCGAGGATTCCAGGATAAGT
GTGGGAAAGAATCCCAT
FMO12716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Cd-RA | 1821 | CG10563-RA | 13..1062 | 8..1060 | 5100 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19127971..19128567 | 461..1060 | 2710 | 98.7 | Plus |
2L | 23513712 | 2L | 19127453..19127656 | 127..330 | 1020 | 100 | Plus |
2L | 23513712 | 2L | 19127714..19127843 | 331..460 | 650 | 100 | Plus |
2L | 23513712 | 2L | 19127272..19127394 | 8..130 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:55 has no hits.
FMO12716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:02 Download gff for
FMO12716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cd-RA | 6..1071 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:10 Download gff for
FMO12716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cd-RA | 8..1073 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:25 Download gff for
FMO12716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cd-RA | 8..1073 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:25 Download gff for
FMO12716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19127267..19127392 | 1..128 | 96 | -> | Plus |
2L | 19127455..19127656 | 129..330 | 100 | -> | Plus |
2L | 19127714..19127843 | 331..460 | 100 | -> | Plus |
2L | 19127971..19128578 | 461..1075 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:10 Download gff for
FMO12716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19127267..19127392 | 1..128 | 96 | -> | Plus |
arm_2L | 19127455..19127656 | 129..330 | 100 | -> | Plus |
arm_2L | 19127714..19127843 | 331..460 | 100 | -> | Plus |
arm_2L | 19127971..19128578 | 461..1075 | 97 | | Plus |