Clone FMO12716 Report

Search the DGRC for FMO12716

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:16
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(2)37Cd-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12716.5prime Sequence

1167 bp (1030 high quality bases) assembled on 2013-01-29

> FMO12716.5prime
CAGTCGACATGTCGCGCCAATTGAGTTTCAATCCGCAGAAAGAATATGAG
TTGATCGAGTACCCCGGCCGAGTGGTAAATCCCGATCGGATGATAGCCAC
TCTGGGCGGCATCATCAATGTGTCTAAGGTTTTGGGCGACGAAGTGAAAC
GATTGGCGTTGCACTTCCATCCGGAGAATCCCTACAACAAACCCACTTTT
GGGGACTGCACGGATAAGACTGGTGTCCTGCTATCCATAACCGTGAGGCG
CCACAAAAAGGACAAGCAACGGCCTCCGGAATATTTTGTGCGGGTGTTGG
GCCACTGCAGCAGGAGCTTCACCTTTGAAACGCTTTGTGATTTCCAATAC
CTACCCCTCTGGTCAACTCCCAAAAGTGACAACGCAAATGCTGCCCAGGA
GCTCACGTACGCTTTGGACCAGTTGAAACCCAAAAACACCACCGACTTGG
ACTACTTTAAACGTCGCCACAGCCAGTTGCTGGCGCTGCCCGAATTGTTC
ACCCACGTGGACACTGTCTATGCGGGCACGTATCGCATCGATCCCTCAGA
AGACGGCCAACATGAGGTGCTGGGCGTGCAGTCCAAGTCCTCCTACGACA
ACCAGGGCGTGGTCTCGTTCAACATGGTGGACAGCTTTCCCACCCAGGCA
GACTCCCAAAACCTTAAACGACTCAAGGTCAAGTACGTTTCGGATGAGCA
GCTGGCATTGGTCAAAAAACTTTTCGATGACTGCCCAATTTGGACCCGAA
TCGCGCTGCAATATGAATCGGGTTTGACCAACGACAAACTCAAGTGCATC
ACTCCATCGCTGGCATTTTACTTTAGCAACGGCCCGTGGCGCACTTTGTA
TGTTCGCTTCGGCTACGATCCCCGCAAGGACTTCAATAGTCGCTACTATC
AGACTTTCGACTTCCGACTCCGATTCAGCACTGGTCTCTCCGATTTCGTG
TATGCTAAGAAGTTCGTAAGCAACGGAGGGCGGCGAACGCCTCCATTCGC
CCCCAATCGAGGATCGAGTTCTCTGATTTGGTTCAGGACCTTTGACTATC
CCTACTTCGAATGAGAGACCAAAGCCTGGCGCCGCTTCAAGCATGCATGG
CTGCGGCTACATTGCAAGGTCCGGTATGGACCGAGGATTCCAGGATAAGT
GTGGGAAAGAATCCCAT

FMO12716.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cd-RA 1821 CG10563-RA 13..1062 8..1060 5100 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19127971..19128567 461..1060 2710 98.7 Plus
2L 23513712 2L 19127453..19127656 127..330 1020 100 Plus
2L 23513712 2L 19127714..19127843 331..460 650 100 Plus
2L 23513712 2L 19127272..19127394 8..130 615 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:39:55 has no hits.

FMO12716.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:02 Download gff for FMO12716.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cd-RA 6..1071 1..1075 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:10 Download gff for FMO12716.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cd-RA 8..1073 1..1075 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:25 Download gff for FMO12716.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cd-RA 8..1073 1..1075 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:25 Download gff for FMO12716.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19127267..19127392 1..128 96 -> Plus
2L 19127455..19127656 129..330 100 -> Plus
2L 19127714..19127843 331..460 100 -> Plus
2L 19127971..19128578 461..1075 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:10 Download gff for FMO12716.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19127267..19127392 1..128 96 -> Plus
arm_2L 19127455..19127656 129..330 100 -> Plus
arm_2L 19127714..19127843 331..460 100 -> Plus
arm_2L 19127971..19128578 461..1075 97   Plus