FMO12717.5prime Sequence
1112 bp (995 high quality bases) assembled on 2013-01-29
> FMO12717.5prime
CAGTCGACATGGATAACGAGGCGTTAGATCCAACAATAAAAAGCAGTACG
TCGGCAGCGACGCCAACAGCAGCAGCATCAGAAACGACAACAACAGCAGC
ATCTTCAGTTGTGGAAACCACAACAACAATCGCGGCGGCCACAGCCTCAG
CGGCAGAATCAAAAAACGAAACAACGGCCACAAACAACAATAGCAACACA
AGCGGCAGCATCAGCAGTAGTAGCAGCAACAATATAGTCATACCGGCATC
GGCCACTAACGGTATCAAAGAGAGTAACAGTAACTTAAGTACAACAACAA
CAGCAGCAGCAGTAGCGGCAGCAACAACTGTAGAAGGAGTAGCTCCAGCA
ATAACGTCCACAATCGTGGTGACCGGCGGCACTCCTCCATTGAGCAGTTT
GGCTAACAAACTCAAGGACAACACACCACCGTACGATGCACCGCCGCCCA
CGCCGATCAGCAAGGTCCTGAACATCACCGGCACCCCGATCGTTCGCAAG
GAGAAGCGCCAGACCAGCGCCCGGTACAATGCCTCCAAGAACTGCGAACT
GACGGCCCTCATTCCGCTAAACGAGAAGACCGCCGCCAGTGAACGTGAGG
AGCTGTTCATACAGAAGATCCAGCAATGCTGCACACTGTTCGACTTCTCC
GAGCCGCTCAGCGACCTCAAGTTCAAGGAGGTGAAGCGGGCGGCTCTGCA
CGAAATGGTCGATTTCCTCACCAACCAAAATGGCGTAATAACCGAAGTTA
TTTACCCGGAGGCGATCAATATGTTTGCTGTCAACCTTTTCCGAACTCTG
CCGCCATCGTCCAACCCGAATGGTGCCGAATTCGATCCGGAGGAGGATGA
GCCCACGTTGGAGTCCTCGTGGCCGCATCTGCAACTCGTTTACGAGCTGT
TCTTGCGCTTCTTGAGTCACCAGATTTTCAACCAGCATGGCAAACGTTTT
ATCGACATCAATTTGTATTACACTATTGATTATCGATTCGGAGATCCACG
TGACGTGATTTCCTGAGACTGTTTACATCGCATTCTATGAAATTTTGGCT
GAGAGCATTAATAGAAGCGATCACATGTCTTTTACGATTATTTATGAACG
AACTCTAATGCC
FMO12717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-RO | 4402 | CG7913-RO | 1266..2378 | 9..1098 | 4950 | 97.7 | Plus |
| PP2A-B'-RN | 2727 | CG7913-RN | 567..1679 | 9..1098 | 4950 | 97.7 | Plus |
| PP2A-B'-RM | 2280 | CG7913-RM | 120..1232 | 9..1098 | 4950 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18169706..18170099 | 9..402 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 18175333..18175529 | 577..773 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 18171528..18171703 | 401..576 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 18175602..18175805 | 773..972 | 820 | 98 | Plus |
Blast to na_te.dros performed 2014-11-28 18:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2836 | 31..528 | 486 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..7060 | 39..360 | 328 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7015 | 28..330 | 320 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6943 | 115..339 | 319 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2544 | 55..316 | 315 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2683 | 39..354 | 311 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6944 | 88..310 | 310 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2525 | 148..363 | 304 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2553 | 91..354 | 301 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6897 | 64..234 | 293 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6896 | 178..355 | 290 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..3034 | 57..353 | 284 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..3001 | 31..247 | 270 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6921 | 142..350 | 260 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2471 | 193..363 | 257 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..7079 | 31..349 | 250 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2509 | 172..381 | 249 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..2916 | 27..364 | 242 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6498..6829 | 26..354 | 236 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2937 | 52..343 | 230 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2885 | 64..363 | 229 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2957 | 33..232 | 229 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2781 | 31..355 | 227 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..7088 | 54..310 | 212 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2585..2855 | 78..351 | 211 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6859 | 221..363 | 205 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6863 | 196..355 | 201 | 63.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 956..1161 | 156..362 | 195 | 57.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1159 | 142..241 | 191 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2408 | 276..363 | 183 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1587 | 29..103 | 178 | 74.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1180 | 71..191 | 177 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1615 | 160..281 | 176 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1161 | 179..267 | 174 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2432 | 253..363 | 169 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1179 | 52..170 | 168 | 62.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1136 | 275..355 | 166 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6851..7005 | 52..198 | 161 | 62.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1080 | 293..400 | 160 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6796 | 292..363 | 153 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2505 | 292..485 | 149 | 55.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3268..3335 | 42..108 | 148 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1161 | 15..128 | 147 | 62.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1101..1164 | 39..104 | 145 | 73.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1154 | 246..328 | 144 | 66.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3277..3342 | 284..349 | 141 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1605 | 30..126 | 138 | 62.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1013..1104 | 259..350 | 136 | 60.9 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 671..722 | 343..292 | 134 | 73.1 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1180 | 31..130 | 133 | 63.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3394 | 54..192 | 133 | 56 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1019 | 61..108 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1589 | 292..360 | 129 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2359 | 298..350 | 121 | 69.8 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 549..622 | 291..361 | 119 | 66.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 67..196 | 201..330 | 118 | 56.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9097..9226 | 201..330 | 118 | 56.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..8049 | 292..387 | 117 | 60.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9493 | 292..387 | 117 | 60.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1006 | 198..234 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1586 | 252..330 | 111 | 63 | Plus |
FMO12717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:03 Download gff for
FMO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RL | 293..1342 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:22 Download gff for
FMO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RM | 120..1169 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:35 Download gff for
FMO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RM | 120..1169 | 9..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:35 Download gff for
FMO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18169706..18170098 | 9..401 | 100 | -> | Plus |
| 3R | 18171529..18171703 | 402..576 | 100 | -> | Plus |
| 3R | 18175333..18175529 | 577..773 | 100 | -> | Plus |
| 3R | 18175603..18175887 | 774..1046 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:22 Download gff for
FMO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13995428..13995820 | 9..401 | 100 | -> | Plus |
| arm_3R | 13997251..13997425 | 402..576 | 100 | -> | Plus |
| arm_3R | 14001055..14001251 | 577..773 | 100 | -> | Plus |
| arm_3R | 14001325..14001609 | 774..1046 | 94 | | Plus |
