FMO12719.5prime Sequence
1126 bp (994 high quality bases) assembled on 2013-01-29
> FMO12719.5prime
CAGTCGACATGAAGGCGACCAGTTGCAGACCAATTCCATTCATCAACTTT
CGGATTGTAAGATATTTCTATCGGCCACGACGATTGAACAAGTATTACGA
TATTTACAGAATAGCTGCCCTTGTGCGGGATCGCGCCTGTCTCTTCACGT
GCCAGCAGGCCTCGCAGAACCTGCAGCAGCAGCAGCCCCGCTTTTATAGT
GCGCCAGGTCGCAGGGCCGGCTTCTTCTCGCAGTTCTTCGACAACATGAA
GGCGGAGATGGATAAGAACAAGGAGATCAAGGACAATATCCGAAAGTTCC
GTGAGGAGGCCCAGAAGCTGGAAGAATCGGATGCCCTGAAATCGGCGCGG
CAAAAGTTTAACATTGTCGAATCGGAGGCGCAAAAGTCGTCTAGCATGCT
AAAGGAGCAGCTGGGCGCCATCAAGGAGCGCGTAGGCGATGTTCTGGAGG
ACGCCAGCAAATCCCACCTGGCCAAAAAGGTTACCGAGGAGCTCTCGAAG
AAGGCTAGGGGGGTCAGCGACACGATCTCCGACACCAGTGGCAAGCTGGG
CCAGACCAGCGCATTCCAGGCTATCTCTAACACGACGACGACCATCAAGA
AGGAGATGGACAGCGCGAGCATAGAGAATCGTGTCTATCGTGCTCCTGCC
AAGTTGCGAAAGCGCGTCCAGCTCGTCATGAGCGATAGTGATCGCGTTGT
GGAGCCCAACACGGAAGCCACTGGTATGGAGCTGCACAAGGACTCCAAGT
TCTACGAGTCGTGTGAGAACTTCAAGAACAACAATACCTACGTGAACAAG
TGCTTGACTGGAAAGTTAAATACGACGAGTCCGAGAACCCTGTTATTCGT
GCCTCCCGCCTGCTGACCGATAAAGTGTCCGACGTCATGGTGGACTCTTT
TCAAGACAGAGCTTTCGGAACGATGACGAGCTGTGAAATCGATCCGAGCT
TTGATCAGAAGATTTCCTCGCGATTGCGAAACGGACATCATTCCAATTAT
TCTGGATCGATTGTCCGTGGGGGATTCTGGAGATTCTGAGATGTGCTTTG
AAGCACTTCAATATTATCCAAATCCATAGGAGGCCTAAAAGGCCGGCCTG
TTACTCTGCAACTCCAAGATCTCCCG
FMO12719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11779-RA | 2281 | CG11779-RA | 170..1301 | 5..1121 | 4955 | 97.1 | Plus |
CG11779-RE | 2474 | CG11779-RE | 155..1186 | 105..1121 | 4470 | 96.9 | Plus |
CG11779-RB | 2679 | CG11779-RB | 360..1391 | 105..1121 | 4470 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19155863..19156406 | 725..182 | 2720 | 100 | Minus |
3R | 32079331 | 3R | 19155474..19155798 | 1039..723 | 1015 | 94.5 | Minus |
3R | 32079331 | 3R | 19159610..19159709 | 104..5 | 485 | 99 | Minus |
3R | 32079331 | 3R | 19156466..19156546 | 185..105 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:29:09 has no hits.
FMO12719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:39 Download gff for
FMO12719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11779-RA | 168..1270 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:36 Download gff for
FMO12719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11779-RA | 168..1270 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:48 Download gff for
FMO12719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11779-RA | 168..1270 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:48 Download gff for
FMO12719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19155416..19155797 | 724..1088 | 93 | <- | Minus |
3R | 19155865..19156402 | 186..723 | 100 | <- | Minus |
3R | 19156466..19156546 | 105..185 | 100 | <- | Minus |
3R | 19159610..19159710 | 1..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:36 Download gff for
FMO12719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14981138..14981519 | 724..1088 | 93 | <- | Minus |
arm_3R | 14981587..14982124 | 186..723 | 100 | <- | Minus |
arm_3R | 14982188..14982268 | 105..185 | 100 | <- | Minus |
arm_3R | 14985332..14985432 | 1..104 | 96 | | Minus |