Clone FMO12719 Report

Search the DGRC for FMO12719

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:19
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12719.5prime Sequence

1126 bp (994 high quality bases) assembled on 2013-01-29

> FMO12719.5prime
CAGTCGACATGAAGGCGACCAGTTGCAGACCAATTCCATTCATCAACTTT
CGGATTGTAAGATATTTCTATCGGCCACGACGATTGAACAAGTATTACGA
TATTTACAGAATAGCTGCCCTTGTGCGGGATCGCGCCTGTCTCTTCACGT
GCCAGCAGGCCTCGCAGAACCTGCAGCAGCAGCAGCCCCGCTTTTATAGT
GCGCCAGGTCGCAGGGCCGGCTTCTTCTCGCAGTTCTTCGACAACATGAA
GGCGGAGATGGATAAGAACAAGGAGATCAAGGACAATATCCGAAAGTTCC
GTGAGGAGGCCCAGAAGCTGGAAGAATCGGATGCCCTGAAATCGGCGCGG
CAAAAGTTTAACATTGTCGAATCGGAGGCGCAAAAGTCGTCTAGCATGCT
AAAGGAGCAGCTGGGCGCCATCAAGGAGCGCGTAGGCGATGTTCTGGAGG
ACGCCAGCAAATCCCACCTGGCCAAAAAGGTTACCGAGGAGCTCTCGAAG
AAGGCTAGGGGGGTCAGCGACACGATCTCCGACACCAGTGGCAAGCTGGG
CCAGACCAGCGCATTCCAGGCTATCTCTAACACGACGACGACCATCAAGA
AGGAGATGGACAGCGCGAGCATAGAGAATCGTGTCTATCGTGCTCCTGCC
AAGTTGCGAAAGCGCGTCCAGCTCGTCATGAGCGATAGTGATCGCGTTGT
GGAGCCCAACACGGAAGCCACTGGTATGGAGCTGCACAAGGACTCCAAGT
TCTACGAGTCGTGTGAGAACTTCAAGAACAACAATACCTACGTGAACAAG
TGCTTGACTGGAAAGTTAAATACGACGAGTCCGAGAACCCTGTTATTCGT
GCCTCCCGCCTGCTGACCGATAAAGTGTCCGACGTCATGGTGGACTCTTT
TCAAGACAGAGCTTTCGGAACGATGACGAGCTGTGAAATCGATCCGAGCT
TTGATCAGAAGATTTCCTCGCGATTGCGAAACGGACATCATTCCAATTAT
TCTGGATCGATTGTCCGTGGGGGATTCTGGAGATTCTGAGATGTGCTTTG
AAGCACTTCAATATTATCCAAATCCATAGGAGGCCTAAAAGGCCGGCCTG
TTACTCTGCAACTCCAAGATCTCCCG

FMO12719.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11779-RA 2281 CG11779-RA 170..1301 5..1121 4955 97.1 Plus
CG11779-RE 2474 CG11779-RE 155..1186 105..1121 4470 96.9 Plus
CG11779-RB 2679 CG11779-RB 360..1391 105..1121 4470 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19155863..19156406 725..182 2720 100 Minus
3R 32079331 3R 19155474..19155798 1039..723 1015 94.5 Minus
3R 32079331 3R 19159610..19159709 104..5 485 99 Minus
3R 32079331 3R 19156466..19156546 185..105 405 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:29:09 has no hits.

FMO12719.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:39 Download gff for FMO12719.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 168..1270 1..1088 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:36 Download gff for FMO12719.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 168..1270 1..1088 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:48 Download gff for FMO12719.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11779-RA 168..1270 1..1088 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:48 Download gff for FMO12719.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19155416..19155797 724..1088 93 <- Minus
3R 19155865..19156402 186..723 100 <- Minus
3R 19156466..19156546 105..185 100 <- Minus
3R 19159610..19159710 1..104 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:36 Download gff for FMO12719.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14981138..14981519 724..1088 93 <- Minus
arm_3R 14981587..14982124 186..723 100 <- Minus
arm_3R 14982188..14982268 105..185 100 <- Minus
arm_3R 14985332..14985432 1..104 96   Minus