FMO12720.5prime Sequence
1144 bp (1032 high quality bases) assembled on 2013-01-29
> FMO12720.5prime
CAGTCGACATGGTGGATAAATTCATCAGCATGTGGAAAGTGCGCGAATTG
GCGGACAAGGTCACCAATGTCGTGATGAATTACACGGAAACGGAGGGCAA
GGTGCGGGAGGCCACCAACGATGATCCTTGGGGGCCTACAGGACCCCTCA
TGCAGGAATTGGCCTATTCCACCTTCTCATACGAAACATTCCCGGAGGTG
ATGTCCATGCTGTGGAAGCGCATGCTGCAGGACAATAAAACCAACTGGCG
ACGCACGTACAAGAGCCTCCTTCTGCTAAACTATTTGGTGCGAAACGGCT
CTGAACGGGTGGTAACCTCCTCTCGGGAGCACATCTACGATCTGCGCTCG
CTGGAGAACTATACATTCACCGACGAGGGCGGCAAGGATCAGGGTATTAA
TGTTAGGCATAAGGTACGAGAGCTTATAGACTTTATTCAGGATGATGATC
GTTTGCGCGAGGAGCGCAAAAAGGCGAAGAAGAACAAGGACAAGTACATC
GGCATGAGCAGCGACGCCATGGGCATGCGAAGCGGTGGCTACAGCGGCTA
TAGCGGTGGATCTGGAGGAGGCGGCGGTGGCAGCGGTGGCTACAATGATG
GCGACTATCGCTCTAGTCGTGGAGACAATTGGTACTCCGACAAAAGCGCC
GACAAGGATCGGTATGAGGATGATGATACTCACTACGATGGAGAGCGAGA
GGGATCCGATAGCGACTCACCCAGTCCAAGACGTAACTATCGATACAATG
ACCGTGCGAGTCCTGCCGAAGTAGCCAGCGAGGCCAAACCTTCCAGCCTC
AACATGAACATTCGTTCGAAGACCGTCAGTTCCCCTGTCTCCAAGCAGCC
CACTTCAACGGCTTCTGCCAAGCCAGCGCTGTCCCAGAAGAGATCGATCT
GGGTGCGGCAGCAAACTTTGGAAAGCCAGCTCCTGCGGTGCTGCTGCATT
CACTCACCAACTCCCCGTGACACTCCCAACAGCGGGACTTGATGGGCGGC
GCTTCGCATCGCGTTCTACTTCAAGGCAAACATTAATACGCAAAGCAATA
ACACGATCTGTCTGGACGAACCTGTTCAAACCTGCCCGCCAACCGCCGGT
AAGAATACCCTGAACATGCTTCCTGATTTGTGATTACCATGATG
FMO12720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lqfR-RD | 5024 | CG31285-RA | 285..1380 | 9..1099 | 5115 | 98.4 | Plus |
| lqfR-RC | 2707 | CG42250-RC | 285..1380 | 9..1099 | 5115 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22412908..22413279 | 262..633 | 1860 | 100 | Plus |
| 3R | 32079331 | 3R | 22413518..22413848 | 729..1053 | 1280 | 96.7 | Plus |
| 3R | 32079331 | 3R | 22412649..22412850 | 62..263 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 22413361..22413457 | 634..730 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 22411585..22411637 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 660..717 | 627..567 | 118 | 68.9 | Minus |
FMO12720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:40 Download gff for
FMO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqfR-RC | 247..1348 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:39 Download gff for
FMO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqfR-RC | 279..1380 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:52 Download gff for
FMO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqfR-RC | 279..1380 | 1..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:52 Download gff for
FMO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22411579..22411637 | 1..61 | 93 | -> | Plus |
| 3R | 22412649..22412850 | 62..263 | 100 | -> | Plus |
| 3R | 22412910..22413279 | 264..633 | 100 | -> | Plus |
| 3R | 22413361..22413457 | 634..730 | 100 | -> | Plus |
| 3R | 22413520..22413855 | 731..1058 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:39 Download gff for
FMO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18237301..18237359 | 1..61 | 93 | -> | Plus |
| arm_3R | 18238371..18238572 | 62..263 | 100 | -> | Plus |
| arm_3R | 18238632..18239001 | 264..633 | 100 | -> | Plus |
| arm_3R | 18239083..18239179 | 634..730 | 100 | -> | Plus |
| arm_3R | 18239242..18239577 | 731..1058 | 96 | -> | Plus |
