FMO12721.5prime Sequence
1136 bp (1023 high quality bases) assembled on 2013-01-29
> FMO12721.5prime
CAGTCGACATGAACGGCAAGATGGACCGCCGCAAGAAACGCACCTCATCG
GAGCAGTACCAAATGTACATCGACATGATGGAGAGCGACCCCATTTTCGC
CACCGGACGAGTGCCGCGCGACTATGACCTGAACTACTTGACCAAAAAGT
GGAAGGAGCTCTCCGACCGGCTAAACAAGTGCAGCTCCGGACCCACACTG
ACGCCGGAGGAGTGGCGCAAGCGCCTAAACGATTGGAAGAACACCACTCG
CTGCAAGTACAGACGCAGCCTTCTGTCCACGGAAAAGGACATCTCGATGA
CCTCCGTGGAGACGCGCGCTCTCGATCTCTTTGGCAAGGTGCCCACCACC
GGCGGCGAAACGATGCTCAATCTGAAGTCCGAAAAGGATGAGCACGACGA
CGAGATGGAGGAACTGGGCCAGCGTACTTCGGTGGCATTTCAAAAGGAAC
TTCAGGCAGCCGTTGAAGAGGCAATCAACGATGAGGTGGACGAGGAGGAG
ATGGTGGAGGAGCATGTCGATCACGAGGACATGATGGAGGAGAATCTGGC
GGAGACCGGCATCACCGCGTCCACAACGGCGGTCAATACGGGTGGCGGCA
CCTATCGCACCATCGTCGTGGACAACACATCCTTCGAGCATGTCGAGGAG
GATCCCCAAACGGTGCAGCCGCACGCCGTCGAGTACGTCACATCCCGCAG
GCCTGCTGCCCCCGTCATCAATCCGGGCACAGCCTCCTCCGGCAATAAGC
TGATCAACGGCGAGCTGCCCGTCAAGCGGATGCGCACACAGCCCAGGGAG
CAAATTATCTACGAAGTTAAAAATGCGCCGCGTTGCATTTCAAACATGCA
GGCCGTGCCGCCGCTGCACAGTACAAAGCTGGAGCGGGAACCCAGTTCGC
TGACAGCGCGCTGAGCAGCAGCGATGCCCAGCAGATCGCGCACCAGCTGA
AGCGACTGGCCCGACATCAAATTCGAGACACTGCATTTGAGATTGCGCGG
CTTCAAGTTCACAACCCGGGCTTCAAGGTACGATTCCGCCGTTCTTAGCA
AGCCTTTCTAGAACATTCGGTTTGACGGCGACCAGGTAGGGTCCCTATTC
TTATCCTATATCCTAATATCTAATCTCCCAACCTTA
FMO12721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prod-RA | 1597 | CG18608-RA | 126..1163 | 9..1047 | 5005 | 99.1 | Plus |
| CG15107-RB | 1118 | CG15107-RB | 215..341 | 143..269 | 290 | 81.9 | Plus |
| CG15107-RA | 1106 | CG15107-RA | 215..341 | 143..269 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18970130..18970730 | 820..220 | 2990 | 99.8 | Minus |
| 2R | 25286936 | 2R | 18970796..18971008 | 221..9 | 1065 | 100 | Minus |
| 2R | 25286936 | 2R | 18969859..18970069 | 1024..815 | 815 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:29:24 has no hits.
FMO12721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:41 Download gff for
FMO12721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prod-RA | 141..1181 | 5..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:42 Download gff for
FMO12721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prod-RA | 123..1163 | 5..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:56 Download gff for
FMO12721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prod-RA | 123..1163 | 5..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:56 Download gff for
FMO12721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18969838..18970067 | 817..1047 | 96 | <- | Minus |
| 2R | 18970134..18970728 | 222..816 | 100 | <- | Minus |
| 2R | 18970796..18971011 | 5..221 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:42 Download gff for
FMO12721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14857343..14857572 | 817..1047 | 96 | <- | Minus |
| arm_2R | 14857639..14858233 | 222..816 | 100 | <- | Minus |
| arm_2R | 14858301..14858516 | 5..221 | 99 | | Minus |
