FMO12722.5prime Sequence
1128 bp (1037 high quality bases) assembled on 2013-01-29
> FMO12722.5prime
CAGTCGACATGGCTGATGATCAGGGACGTGGACGCAGGCGTCCACTTAAC
GAAGATGATTCCTCTACTTCCCGAGGTAGTGGTGATGGGCCGCGGGTGAA
AGTATTCAGAGGATCTTCATCAGGTGACCCGAGAGCGGATCCTCGTATAG
AGGCTTCAAGAGAGAGAAGAGCTCTCGAGGAAGCTCCCAGGCGTGAAGGT
GGCCCGACAGAGCGAAAGCCGTGGGGTGACCAATATGATTACCTGAATAC
CCGTCCGGCTGAGCTGGTATCCAAGAAGGGAACCGATGGCGTCCCGGTCA
TGCTGCAGACGAACTTTTTCCGATTAAAAACCAAGCCGGAATGGCGGATC
GTTCATTATCACGTGGAGTTTGAGCCGAGCATCGAGAATCCTCGTGTCCG
TATGGGAGTTTTGTCCAATCATGCTAACCTTCTGGGATCAGGCTATCTAT
TCGATGGACTGCAACTGTTCACCACCAGGAAATTCGAGCAGGAAATCACG
GTGCTCAGCGGAAAGTCGAAGCTGGACATTGAATACAAGATATCCATAAA
GTTCGTTGGATTCATATCGTGTGCTGAGCCCCGCTTTTTGCAAGTCTTAA
ATCTAATATTGCGCCGCTCCATGAAGGGCCTAAATTTGGAATTAGTTGGC
CGTAATCTCTTTGATCCCCGAGCTAAGATCGAAATAAGGGAGTTCAAAAT
GGAGCTATGGCCGGGCTATGAGACATCGATTCGTCAGCACGAAAAAGATA
TTTTATTGGGCACCGAAATAACTCACAAAGTTATGCGCACCGAGACGATC
TACGACATAATGCGACGTTGCTCACACAATCCGGCTCGTCATCAGACGAA
GTACGGGTAAATGTTTTGGACTTGATTGTCCTTACGGATTACATACAGAA
CTTATCGTATCAATGATGTCGACTTTGGACAACTCCGAAATCACATTCAG
TTGCAAGGGTAGAGATTATCAGTTTCGTGAATACTATCTCCACTAAATAT
AATATACGCATTCCCGACCACAATCAGCCGCCTGCTGATCCTCAAAATAG
GACCAGGCTCTTAAAACTACGCTAGGCGATATGTTACTATCCTGAGCTCT
CGCCGAGGATCTGGTCAATGGCGAGAAT
FMO12722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| piwi-RB | 2969 | CG6122-RB | 89..1217 | 9..1126 | 5025 | 97.4 | Plus |
| piwi-RA | 3073 | CG6122-RA | 89..1217 | 9..1126 | 5025 | 97.4 | Plus |
| aub-RC | 2808 | CG6137-RC | 846..936 | 706..796 | 185 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10985544..10986129 | 677..92 | 2930 | 100 | Minus |
| 2L | 23513712 | 2L | 10985170..10985489 | 990..676 | 1275 | 97.5 | Minus |
| 2L | 23513712 | 2L | 10987249..10987332 | 92..9 | 420 | 100 | Minus |
| 2L | 23513712 | 2L | 10999988..11000078 | 796..706 | 185 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:26 has no hits.
FMO12722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:59 Download gff for
FMO12722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| piwi-RA | 77..1131 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:51 Download gff for
FMO12722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| piwi-RA | 81..1135 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:10 Download gff for
FMO12722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| piwi-RA | 81..1135 | 1..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:10 Download gff for
FMO12722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10985044..10985100 | 995..1051 | 91 | <- | Minus |
| 2L | 10985167..10985487 | 678..994 | 97 | <- | Minus |
| 2L | 10985544..10986128 | 93..677 | 100 | <- | Minus |
| 2L | 10987249..10987339 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:51 Download gff for
FMO12722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10985044..10985100 | 995..1051 | 91 | <- | Minus |
| arm_2L | 10985167..10985487 | 678..994 | 97 | <- | Minus |
| arm_2L | 10985544..10986128 | 93..677 | 100 | <- | Minus |
| arm_2L | 10987249..10987339 | 1..92 | 95 | | Minus |
