Clone FMO12725 Report

Search the DGRC for FMO12725

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:25
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32023-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12725.5prime Sequence

506 bp (506 high quality bases) assembled on 2013-01-29

> FMO12725.5prime
CAGTCGACATGCAGTATACTCAGCTCCTGAGAGTTTTGTGCTCCATCGTG
ATCATATCCTATATGGCAGTCCATGTTCTCGGGGACATAAAATGCAATGT
GTGTCAACCAAATCATGTCAAGTGCCTGAACGAGACCCACTTTAGTTTTT
GCCTCGACGCCGTTTCGTCGGATCAGGTTATCCAGTGTCCCGACGGCCAG
GTTTGCACCAGCCTCCTGAAGATCTGCCTGCCCAAGGGATCGACTCCAGC
TTCCTGCACTCCAGATGCCGAAATATCGTGTCCTCCTTGCAGTGGAGCAG
GTCTATTCGTCTGCACTAGCCGCACCACCTTCCAAATGTGTGATGAAGGC
AAGCTCATCGGCCAAGTAACGAAGTGCAAGGATAACACTTTCTGCTCCAT
GAAGTCGAAAAAGTTTTGCGTAGATCAGTGTGAAATAACGAAATCTCAAA
ATGGATTCGAGTGCGACAGAGAGTCCCCCTTGGATGTAGCAAGCTTTCTA
GACCAT

FMO12725.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32023-RA 525 CG32023-RA 5..484 9..488 2400 100 Plus
CG13311-RA 568 CG13311-RA 328..429 306..407 180 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8803643..8804093 488..38 2255 100 Minus
3L 28110227 3L 8801679..8801780 407..306 180 78.4 Minus
Blast to na_te.dros performed on 2014-11-28 18:29:52 has no hits.

FMO12725.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:43 Download gff for FMO12725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32023-RA 1..487 5..492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:58 Download gff for FMO12725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32023-RA 1..487 5..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:12 Download gff for FMO12725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32023-RA 1..487 5..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:12 Download gff for FMO12725.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8803644..8804092 39..487 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:58 Download gff for FMO12725.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8796744..8797192 39..487 100 <- Minus