Clone FMO12726 Report

Search the DGRC for FMO12726

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:26
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42827-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12726.5prime Sequence

374 bp (374 high quality bases) assembled on 2013-01-29

> FMO12726.5prime
CAGTCGACATGCGTTTGACAATCTTATGTATTTTTTGCCTGGCAACTGTG
ATCCTGGCTATCGACATGGACTCGGATTCACTACAGGAACAGTACGAAAG
GGAGCAGTACAATATTCGCAAAAAAATTTGCCTTCAAAGTTCGGAATACG
GAAAGTGCAAAGGTCGTCGGAAACTTTGGTTCTACAACCCCAAGAAATCC
AAGTGTCAAGTTTTTATCTACTCGAATTGTGGTGGCAATGGCAACCTTTT
CTATACCAAGGAAAGTTGCGTGGAATTTTGTGGCAAATACGACTGGAAGA
AGGTGCGAAAGACAGGACTTCGACGTTCAGCTGATTATAGAAGAAAAGAT
GGGAATGCAAGCTTTCTAGACCAT

FMO12726.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42827-RD 425 CG42827-RD 11..358 9..356 1740 100 Plus
CG42827-RC 558 CG42827-RC 144..491 9..356 1740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23373301..23373533 124..356 1165 100 Plus
3R 32079331 3R 23373120..23373234 9..123 575 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:29:58 has no hits.

FMO12726.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:44 Download gff for FMO12726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42827-RC 136..496 1..364 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:01 Download gff for FMO12726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42827-RC 136..496 1..364 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:16 Download gff for FMO12726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42827-RC 136..496 1..364 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:16 Download gff for FMO12726.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23373112..23373234 1..123 96 -> Plus
3R 23373301..23373538 124..364 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:01 Download gff for FMO12726.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19198834..19198956 1..123 96 -> Plus
arm_3R 19199023..19199260 124..364 98   Plus