Clone FMO12727 Report

Search the DGRC for FMO12727

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG18193-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12727.5prime Sequence

344 bp (344 high quality bases) assembled on 2013-01-29

> FMO12727.5prime
CAGTCGACATGCAAAGAAACTGTTTCTCTTTGCGCCCCTTCCTTCGGGGA
GTCGGTGATGTGGGTGCAGTTTGTAAGCCCATTCGTGAATTTCGCAACTC
GGCTGCTTTGAAATATGCTGCTGCTGCAGCTGCAGCTCCGAAGACACGTC
CTGGAAAAGTTCCTCCAAAAATGGTCAAATTGAGGAAGCAATTTCAGGCG
GACAATGATTTGCCGATTTTTCTAAAAGGCGGCAGTATGGATAACATATT
ATACAGACTCACCTGGGTGCTCTGCTTCCTCGGCATAGGTGGCGATGTAT
GGTTGTGGCTTGGCTATATCATTGCCGCAAGCTTTCTAGACCAT

FMO12727.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG18193-RA 587 CG18193-RA 105..422 9..326 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8343855..8344145 36..326 1455 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:30:05 has no hits.

FMO12727.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:45 Download gff for FMO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18193-RA 89..414 1..330 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:05 Download gff for FMO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18193-RA 100..425 1..330 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:20 Download gff for FMO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18193-RA 100..425 1..330 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:20 Download gff for FMO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8343855..8344148 36..330 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:05 Download gff for FMO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4169577..4169870 36..330 99   Plus