FMO12729.5prime Sequence
638 bp (638 high quality bases) assembled on 2013-01-29
> FMO12729.5prime
CAGTCGACATGGATAGTAATGATTCAGGAACAGCAGATGCGAATTCTGCA
CGGCAGTCGCTTGCGTTGCGGCGGGAATTGCGCAGAAAGAAAATATTGGA
AGCGTCCAAGGCACGACTGGACAAATTGAATAGCAGATCGACGTCGGCGT
TTCAGAATGAAAACCTCGATGGTGAACCCTCAAATACGCAATATTCCGAT
CCGGAGGTGGAGCCGGATATTCCAATAAGGCGTTCATTTCTGCCAGAACA
ACCTGCGCCCCAAAGAACCACGTCACGAAATGCATTTCTTAAGAGCAGAG
TTCACATTATTTTGGCGGCTTGCTTTGGATTTCTTTTGGCTCTTTACACG
AACACCAGTGTTTTCATTCCCGTTCTGCTTTTTGTGATTGCAGAGCTTGC
ATTTCTGCAGAATTACAAAGAAGACCATTTACCGGCCAGCATGGGACCCT
TGTTACTTATGTTCATCAATCCGAATATTACCAGCAAAATTAAGCAGTTT
AGCAGTATATTTTTTATTCTTCAGTCATTGTTGGGTGATCTTGCGATAAC
CGTTTGTGTTGTTTGTTCAGGAAGCATGCTCTTACTAAATTTTAGACCCG
AATATGCTACAATTGTTAAAGCAAGCTTTCTAGACCAT
FMO12729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)SH0834-RA | 936 | CG5385-RA | 42..653 | 9..620 | 3030 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10311333..10311785 | 620..168 | 2250 | 99.8 | Minus |
2L | 23513712 | 2L | 10311899..10312058 | 168..9 | 785 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:30:14 has no hits.
FMO12729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:46 Download gff for
FMO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5385-RA | 12..631 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:12 Download gff for
FMO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5385-RA | 42..661 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:25 Download gff for
FMO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)SH0834-RA | 42..661 | 9..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:25 Download gff for
FMO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10311325..10311784 | 169..628 | 98 | <- | Minus |
2L | 10311899..10312058 | 9..168 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:12 Download gff for
FMO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10311325..10311784 | 169..628 | 98 | <- | Minus |
arm_2L | 10311899..10312058 | 9..168 | 99 | | Minus |