Clone FMO12729 Report

Search the DGRC for FMO12729

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:29
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5385-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12729.5prime Sequence

638 bp (638 high quality bases) assembled on 2013-01-29

> FMO12729.5prime
CAGTCGACATGGATAGTAATGATTCAGGAACAGCAGATGCGAATTCTGCA
CGGCAGTCGCTTGCGTTGCGGCGGGAATTGCGCAGAAAGAAAATATTGGA
AGCGTCCAAGGCACGACTGGACAAATTGAATAGCAGATCGACGTCGGCGT
TTCAGAATGAAAACCTCGATGGTGAACCCTCAAATACGCAATATTCCGAT
CCGGAGGTGGAGCCGGATATTCCAATAAGGCGTTCATTTCTGCCAGAACA
ACCTGCGCCCCAAAGAACCACGTCACGAAATGCATTTCTTAAGAGCAGAG
TTCACATTATTTTGGCGGCTTGCTTTGGATTTCTTTTGGCTCTTTACACG
AACACCAGTGTTTTCATTCCCGTTCTGCTTTTTGTGATTGCAGAGCTTGC
ATTTCTGCAGAATTACAAAGAAGACCATTTACCGGCCAGCATGGGACCCT
TGTTACTTATGTTCATCAATCCGAATATTACCAGCAAAATTAAGCAGTTT
AGCAGTATATTTTTTATTCTTCAGTCATTGTTGGGTGATCTTGCGATAAC
CGTTTGTGTTGTTTGTTCAGGAAGCATGCTCTTACTAAATTTTAGACCCG
AATATGCTACAATTGTTAAAGCAAGCTTTCTAGACCAT

FMO12729.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)SH0834-RA 936 CG5385-RA 42..653 9..620 3030 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10311333..10311785 620..168 2250 99.8 Minus
2L 23513712 2L 10311899..10312058 168..9 785 99.4 Minus
Blast to na_te.dros performed on 2014-11-28 18:30:14 has no hits.

FMO12729.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:46 Download gff for FMO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5385-RA 12..631 9..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:12 Download gff for FMO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5385-RA 42..661 9..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:25 Download gff for FMO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)SH0834-RA 42..661 9..628 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:25 Download gff for FMO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10311325..10311784 169..628 98 <- Minus
2L 10311899..10312058 9..168 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:12 Download gff for FMO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10311325..10311784 169..628 98 <- Minus
arm_2L 10311899..10312058 9..168 99   Minus