FMO12732.5prime Sequence
1138 bp (1027 high quality bases) assembled on 2013-01-29
> FMO12732.5prime
CAGTCGACATGGTCATTCAGCGAAGTTGGAAGATCCCCACTGACGTGGGG
GGTTCCATAAACAGCAGCACCACATCAGCTAACGAGGTGCAGCAGCGTTC
ATCTCCGGGCATGCAACTGCAGGCAGCCAATTCCTCCTCAGACGACTCCG
ACTGCTCTAATCAAACCACACATTCGATGGACACACGGGTGGCCAGTCCG
GTGGAGGGTGTCCGAAAGCAGACGGAAAAGGATGTGGTACCCGAAACCAA
CACAATCACCTTGTCCCTGCTGGGCGAATCCACATCCTCTGATGCAGAGT
CCTCGCAGAAATATGTAACCACACCAGACATGGCCGAGAACATGTTGCAA
CGCATTCGCCAGCGACTTGGTGGCTCTCACAATATGGAAAGTGGCGGTAG
TGCGGAGTCCGCGATGAGAGCTCTAGAACTTTTGAGGATCAGTGTACAGC
AAGCCTTTGATGCTGAGGTGAATGAGCTCATTAAGAAATATATGCAAAAC
TACTTTAAACCCGCTTTTGGCAACATCAAGGAGAACCTGGGCCAGCATTC
TGTTAATGAGGAAACACTTCAGAAGATGTCCTCGTGTGCATTGTTGGAGA
ATGCCAAGGCTCAGTACACGAACTTTGTGCGCCAGCATCGTTTGGTTGCT
AACGCCACGGATCAGCAGCGCTTGGCGCTCAAACGCTCAGCTAAACAGGA
TCTCAACCCAATTAGTAAAGTGTTTGCTGGTAACGCGGGTTTTATGCCAA
ACAAACCCATGCCCTGCACGGCAACTACGGCCAACCAATTGCCAACCCAG
AACCAAACCCTGCGGCTCTCCTGCTTTCTCAACCGGACTTGCAACCAGTT
CAACCTCTTCAGCAGCAGCAGCAACAGGAACAAACACAAACGCAAACCAC
ACACCGCAGCATCGCTCCACGGTTACTCCATTGGTGGGCGGCACTCTGCC
CACTCCTGTGCGCCGGCAGATATCTGACACCGCGCAGATTTCGACTACCA
CCAGTTCGTGCTGATGTTGCAGCTAACCTATTCGTTTGCTTTGCACCGAC
GGCAGACGATTAGCCAGCAGCATCGAATGATACGCTACCTGCCGGAATGC
AGACGGGAGTGGTTGGCACGGGGAATAATTCTGCGAAT
FMO12732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42304-RA | 3245 | CG32297-RA | 1269..2400 | 7..1117 | 5045 | 97.6 | Plus |
| CG42304-RB | 2039 | CG42304-RB | 63..1194 | 7..1117 | 5045 | 97.6 | Plus |
| Snup-RA | 3245 | CG32297-RA | 1269..2400 | 7..1117 | 5045 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2653970..2654494 | 498..1013 | 2270 | 97.7 | Plus |
| 3L | 28110227 | 3L | 2653356..2653657 | 7..308 | 1510 | 100 | Plus |
| 3L | 28110227 | 3L | 2653713..2653906 | 304..497 | 970 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2832 | 844..913 | 140 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6806 | 851..913 | 137 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2469..2549 | 830..911 | 137 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6690..6785 | 819..913 | 135 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2457 | 772..913 | 134 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2406 | 830..913 | 134 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1603 | 851..903 | 128 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 830..913 | 125 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2443..2508 | 849..913 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6827 | 851..913 | 119 | 67.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3320 | 841..889 | 118 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2397 | 841..913 | 117 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5623..5682 | 832..890 | 117 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1595 | 851..901 | 111 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2376 | 860..913 | 110 | 69 | Plus |
FMO12732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:47 Download gff for
FMO12732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42304-RA | 1214..2348 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:25 Download gff for
FMO12732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42304-RA | 1266..2400 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:35 Download gff for
FMO12732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snup-RA | 1266..2400 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:35 Download gff for
FMO12732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2653353..2653657 | 1..308 | 98 | -> | Plus |
| 3L | 2653718..2653906 | 309..497 | 100 | -> | Plus |
| 3L | 2653970..2654610 | 498..1117 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:25 Download gff for
FMO12732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2653353..2653657 | 1..308 | 98 | -> | Plus |
| arm_3L | 2653718..2653906 | 309..497 | 100 | -> | Plus |
| arm_3L | 2653970..2654610 | 498..1117 | 95 | | Plus |
