FMO12735.5prime Sequence
1126 bp (996 high quality bases) assembled on 2013-01-29
> FMO12735.5prime
CAGTCGACATGTTTCTGCTTGGGATCTGCTTTATTTGCAGTCTTAACCCT
TTAGTGCTAAATGCATTTCCTGTGGAATCCCAGGCCGATTCCAAGGATTT
GAGTGTCCTGAATGCTCCCTTGACCGATCCTGCCGACTATCCCGACCTCA
CAAATGGTCTTACCGATGCGGAGGTACAGGAGAGCCTCAAGGATCTAACC
TTAGATGATCTTAACTCCTTGAACAAGCTACTTGATGAGCGCCTTGGCCG
AGATGAAGATGTCGACTCTGACGCGAGTCTAACAACACATGGTAGACAAG
CGATGGCCAATATACGCAAGCAGGACTTTCAGTCCATGGAAGTAGGTCTC
GATGATAACTGCCGGGATGAGGAGGATTCCGATGAAACGAAGCCTAATTT
GTGCACAAAGAGACCCACTTGCCCGACTACCAAGCGTTGCTCAAGGAAAA
GCACTTGTGTGCCGAAAACCACTCGAATGTGCTCAACTAAAAGCGCCTAC
GATAGTTGCAAGCCAAAATCCGGTGGCTTTATGGACGACGATCTTATAAG
CGAAACTACCAAATCTCCGAAGCCAAAGAACAAAAAGTGCAAGAAACCTA
AGGATGACTTCGAATGCGAGGCAGATGACTTTCTGTGCCAGGCCAGCAGG
CGATCAAGGGGCAAGGAAGTAGAAACACACTTTTGGATGAAGAATATATT
CCAGGGCGGCCGTTGACTGGAAATGCGCAGCTGGGTGATGAGCTCACATC
AGCATTAAATGATCAAGGTGAACCATTGAATGATGCACAAATGGAACTAT
CAAACTCCGAGTTTGACAACAACTTAGCCTAGAAAATCCAGATAGTTTGG
AGCAAGGTCAGCCTTTTGACTTAGAAAGGATAGCAAGATTATACAGAGCA
GAAACATCAACTAATTTAAAAACGAGTATAGTCGTGAAATCTTATGCAGA
TTACCCCAAAACTTGAAGCACGACTTTCAGCATTGAAAGAAGAGATCAGC
ACTTGATCAGACTATATGCTAGATGATCAGACATCTACTGCTTAAGAGCT
AAAGCAGTCCACTTTGATCAGAAGAATCAGTTATTACAGATATCAGTCTA
ACCTGACATTTACATCGTCATTCGGA
FMO12735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31805-RC | 2067 | CG31805-RC | 55..1157 | 9..1082 | 4715 | 96.9 | Plus |
CG31805-RB | 2057 | CG31805-RB | 55..1157 | 9..1082 | 4715 | 96.9 | Plus |
CG31805-RD | 2061 | CG31805-RD | 55..1161 | 9..1082 | 4665 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16899334..16900043 | 973..273 | 3100 | 98.7 | Minus |
2L | 23513712 | 2L | 16900101..16900300 | 273..74 | 1000 | 100 | Minus |
2L | 23513712 | 2L | 16900353..16900419 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 5289..5347 | 552..609 | 121 | 69.5 | Plus |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 1198..1251 | 439..492 | 117 | 68.5 | Plus |
FMO12735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:42 Download gff for
FMO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31805-RB | 13..1033 | 9..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:48 Download gff for
FMO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31805-RB | 55..1075 | 9..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:03 Download gff for
FMO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31805-RB | 55..1075 | 9..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:03 Download gff for
FMO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16899334..16900042 | 274..973 | 98 | <- | Minus |
2L | 16900101..16900299 | 75..273 | 100 | <- | Minus |
2L | 16900354..16900419 | 9..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:48 Download gff for
FMO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16899334..16900042 | 274..973 | 98 | <- | Minus |
arm_2L | 16900101..16900299 | 75..273 | 100 | <- | Minus |
arm_2L | 16900354..16900419 | 9..74 | 100 | | Minus |