Clone FMO12735 Report

Search the DGRC for FMO12735

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:35
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31805-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12735.5prime Sequence

1126 bp (996 high quality bases) assembled on 2013-01-29

> FMO12735.5prime
CAGTCGACATGTTTCTGCTTGGGATCTGCTTTATTTGCAGTCTTAACCCT
TTAGTGCTAAATGCATTTCCTGTGGAATCCCAGGCCGATTCCAAGGATTT
GAGTGTCCTGAATGCTCCCTTGACCGATCCTGCCGACTATCCCGACCTCA
CAAATGGTCTTACCGATGCGGAGGTACAGGAGAGCCTCAAGGATCTAACC
TTAGATGATCTTAACTCCTTGAACAAGCTACTTGATGAGCGCCTTGGCCG
AGATGAAGATGTCGACTCTGACGCGAGTCTAACAACACATGGTAGACAAG
CGATGGCCAATATACGCAAGCAGGACTTTCAGTCCATGGAAGTAGGTCTC
GATGATAACTGCCGGGATGAGGAGGATTCCGATGAAACGAAGCCTAATTT
GTGCACAAAGAGACCCACTTGCCCGACTACCAAGCGTTGCTCAAGGAAAA
GCACTTGTGTGCCGAAAACCACTCGAATGTGCTCAACTAAAAGCGCCTAC
GATAGTTGCAAGCCAAAATCCGGTGGCTTTATGGACGACGATCTTATAAG
CGAAACTACCAAATCTCCGAAGCCAAAGAACAAAAAGTGCAAGAAACCTA
AGGATGACTTCGAATGCGAGGCAGATGACTTTCTGTGCCAGGCCAGCAGG
CGATCAAGGGGCAAGGAAGTAGAAACACACTTTTGGATGAAGAATATATT
CCAGGGCGGCCGTTGACTGGAAATGCGCAGCTGGGTGATGAGCTCACATC
AGCATTAAATGATCAAGGTGAACCATTGAATGATGCACAAATGGAACTAT
CAAACTCCGAGTTTGACAACAACTTAGCCTAGAAAATCCAGATAGTTTGG
AGCAAGGTCAGCCTTTTGACTTAGAAAGGATAGCAAGATTATACAGAGCA
GAAACATCAACTAATTTAAAAACGAGTATAGTCGTGAAATCTTATGCAGA
TTACCCCAAAACTTGAAGCACGACTTTCAGCATTGAAAGAAGAGATCAGC
ACTTGATCAGACTATATGCTAGATGATCAGACATCTACTGCTTAAGAGCT
AAAGCAGTCCACTTTGATCAGAAGAATCAGTTATTACAGATATCAGTCTA
ACCTGACATTTACATCGTCATTCGGA

FMO12735.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31805-RC 2067 CG31805-RC 55..1157 9..1082 4715 96.9 Plus
CG31805-RB 2057 CG31805-RB 55..1157 9..1082 4715 96.9 Plus
CG31805-RD 2061 CG31805-RD 55..1161 9..1082 4665 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16899334..16900043 973..273 3100 98.7 Minus
2L 23513712 2L 16900101..16900300 273..74 1000 100 Minus
2L 23513712 2L 16900353..16900419 75..9 335 100 Minus
Blast to na_te.dros performed 2014-11-28 18:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 5289..5347 552..609 121 69.5 Plus
Doc2-element 4789 Doc2-element DOC2 4789bp 1198..1251 439..492 117 68.5 Plus

FMO12735.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:42 Download gff for FMO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31805-RB 13..1033 9..1011 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:48 Download gff for FMO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31805-RB 55..1075 9..1011 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:03 Download gff for FMO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31805-RB 55..1075 9..1011 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:03 Download gff for FMO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16899334..16900042 274..973 98 <- Minus
2L 16900101..16900299 75..273 100 <- Minus
2L 16900354..16900419 9..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:48 Download gff for FMO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16899334..16900042 274..973 98 <- Minus
arm_2L 16900101..16900299 75..273 100 <- Minus
arm_2L 16900354..16900419 9..74 100   Minus