FMO12742.5prime Sequence
500 bp (-86 high quality bases) assembled on 2013-01-29
> FMO12742.5prime
CAATCCACATGTCGCATGGGAATAAGCAAAATTTCTCCAAGATCTGGGAT
CTTGGAAAGTGGGAATCGCGGGATATAAAGCATTACAGCACAATATCGCG
AATCCAAAAACAACTACGTCTCGGAAACTGGGAATATCTCTGTCAGCATC
CAGAGATACGGGCCATAATTCGTGTTATCCTTCATCAGGCACTCAATGGA
AAACCGAAGCCGGAAAATCTCCGAAAATTTGTTGCTGATTTGTTCAACTG
CGCACAGAATCCGCTGCTAGTGCCTATGATTAACACACAGCTGAAGTACG
TTAAGAACGAATTGAAACGTGGCCGCTGGAGTCAGTTCGACGCCGAGATG
CTCTTCATGGAGAGTCCATCGACGCACTCACTCCTCTCGACGGCATCCGA
GGATAGCAATGTCCATCCGGTGCTTACATATGCGCTGGTCTTCAAGAAAC
CCGATGAGTGCGGCATCGACAAGCCGCCGTTCGCAAGCTTTCTAGACCAT
FMO12742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34012-RA | 551 | CG34012-RA | 31..504 | 9..482 | 2355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11108867..11109071 | 482..278 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 11109329..11109475 | 155..9 | 720 | 99.3 | Minus |
| 3L | 28110227 | 3L | 11109144..11109268 | 278..154 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:09 has no hits.
FMO12742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:09 Download gff for
FMO12742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34012-RA | 27..508 | 2..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:53 Download gff for
FMO12742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34012-RA | 27..508 | 2..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:59 Download gff for
FMO12742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34012-RA | 27..508 | 2..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:59 Download gff for
FMO12742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11108863..11109070 | 279..488 | 98 | <- | Minus |
| 3L | 11109144..11109266 | 156..278 | 100 | <- | Minus |
| 3L | 11109329..11109478 | 2..155 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:53 Download gff for
FMO12742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11101963..11102170 | 279..488 | 98 | <- | Minus |
| arm_3L | 11102244..11102366 | 156..278 | 100 | <- | Minus |
| arm_3L | 11102429..11102578 | 2..155 | 96 | | Minus |
