FMO12744.5prime Sequence
1094 bp (996 high quality bases) assembled on 2013-01-29
> FMO12744.5prime
CAGTCGACATGGCCAATATAATGAGAAGAACGTTGATTCCTGGACTTTCA
CACTTGAGGCTGCGGCCACAACTTGTTGCAGCTGGATCGGCCGCGTTAAC
TTCTCAGGAGACGCGACGGGGAGCAGCCAAGTGGTATCCAGACCCTGAGT
TCATGAAGCAGTTTAGCGGCCCGGTGATGTATCCAGACGAGGTCACATCA
CTTTGGACAGTGCCACCATGGAACAGCAAAGTAACGCCTGTCGAAAAGTC
GGTGCGTAATCTGACCTTGAACTTCGGCCCACAACATCCCGCCGCCCACG
GAGTCCTTCGTCTTGTGCTGGAGCTGGATGGAGAGACCGTTATGCGTGCC
GATCCGCATATTGGGCTGCTGCACCGTGGGACCGAAAAGCTCATAGAGTA
CAAGACATACACCCAGGCATTGCCGTATTTTGACCGGCTGGACTACGTCT
CGATGATGTGCAACGAGCAATGCTACTCTCTGGCTGTAGAAAAACTCCTT
AATATTGATGTGCCTCTCCGTGCTAAGTACATTCGAACTCTCTTTGCCGA
GATTACTCGTATTCTCAATCACATTATGGCCGTCGGAACACATGCCTTAG
ATGTTGGTGCTCTAACGCCATTTTTTTGGCTATTCGAGGAGCGAGAGAAA
ATGATGGAATTCTATGAGCGAGTTTCTGGTGCCCGAATGCATGCTGCCTA
CATACGTCCTGGCGGGGTGTCATTGGATATGCCTCTTGGTCTTATGGACG
ATATCTATGAGTTTGCATCAAAGTTTGCTGAGCGGTTGGACGAAGTGGAG
GATGTGTTAACTACAAATCGAATCTGGGTGCAGCGGACCGAGGACATTGG
GATCGTAACTGCAGAAGAAGCTTTGAACTATGGCTTCAGTGGAGTTATGT
TGCGTGATCTGGCATAAATGGGATCTTCGAAAGCAGCAGCCGTACGATGC
TTATTATTTGTAACTTGATGTTTCCATCGGCACAAGGGGACTGCTACGAC
GATATTCTTTGCGGGTCGGAGAAATGGCTCAGTCATTACGATAATGATCA
TGCTTAATCAATGCCTGGCTGGAAAATTAATACGGATGATAGCC
FMO12744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1970-RB | 1584 | CG1970-RB | 107..1201 | 9..1090 | 4910 | 97.4 | Plus |
| CG1970-RA | 1573 | CG1970-RA | 96..1190 | 9..1090 | 4910 | 97.4 | Plus |
| CG11913-RB | 1700 | CG11913-RB | 465..625 | 285..445 | 250 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 568733..569057 | 1041..725 | 1105 | 92.9 | Minus |
| 4 | 1348131 | 4 | 569975..570178 | 537..334 | 1020 | 100 | Minus |
| 4 | 1348131 | 4 | 569113..569301 | 726..538 | 945 | 100 | Minus |
| 4 | 1348131 | 4 | 570408..570533 | 226..101 | 630 | 100 | Minus |
| 4 | 1348131 | 4 | 570234..570343 | 335..226 | 550 | 100 | Minus |
| 4 | 1348131 | 4 | 570604..570695 | 100..9 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 25358799..25358959 | 285..445 | 250 | 77 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:41:24 has no hits.
FMO12744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:10 Download gff for
FMO12744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1970-RA | 96..1159 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:03 Download gff for
FMO12744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1970-RA | 92..1155 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:09 Download gff for
FMO12744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1970-RA | 92..1155 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:09 Download gff for
FMO12744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 568775..569056 | 726..1000 | 96 | <- | Minus |
| 4 | 569114..569301 | 538..725 | 100 | <- | Minus |
| 4 | 569975..570176 | 336..537 | 100 | <- | Minus |
| 4 | 570234..570343 | 226..335 | 100 | <- | Minus |
| 4 | 570409..570533 | 101..225 | 100 | <- | Minus |
| 4 | 570604..570699 | 1..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:03 Download gff for
FMO12744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 589401..589682 | 726..1000 | 96 | <- | Minus |
| arm_4 | 589740..589927 | 538..725 | 100 | <- | Minus |
| arm_4 | 590601..590802 | 336..537 | 100 | <- | Minus |
| arm_4 | 590860..590969 | 226..335 | 100 | <- | Minus |
| arm_4 | 591035..591159 | 101..225 | 100 | <- | Minus |
| arm_4 | 591230..591325 | 1..100 | 96 | | Minus |
