FMO12745.5prime Sequence
884 bp (884 high quality bases) assembled on 2013-01-29
> FMO12745.5prime
CAGTCGACATGAAGGTCCTAACTCTTATCCTCTTCACTGCCTTGGTGGCA
GTGGCTTCTGGCCGCCCCAATGGCGGTTGGTTCGGAAATTTTGGCAGCAA
CTGGGCCAGGAGGTTCGGTTGGGGCTCCGGTGACGATGAAATCGTGCAGG
AACAGAGGTGGAATAGCCAAAATCAGTGGAATCCAAATGGCAACGGTCAG
GGTCAGTGGGATGGCGAAAATGGTCAGGGACAATCTCACGGAAACAATCA
AGGCCTCGGCCAAGGAAACGGACACGGAAACAACCATCATGGTCATCATG
GCAACAGTCATGGTCATGGTAATGGTCAAGGCCACGGTGGACAGCGCCCT
CCTCCACCACCACCAACGGATCTGCCTGAGTTGACCACCGAGGATGATGT
GGTATCCACCACGGATGTTACCAGTCCCGCGGAGGAGACCACTCTGGTAC
TCGAGGTTCCAGAAGAATCTACCAGTCAGGCACCAGAGGAAATCACCACC
GGCTCTGAAGAAGGCAGCGGTTCCTCGGAGGACACCACCACCCTGGCCCC
TGAAGTTCCGGAGGAATCCACCACTCAGGCACCGGAGGAAAGCACCACCG
ACTCTGAGGATGGTAGCGGTTCTGAGGATACCACTCAGGCTCCGGAAGAA
ACCACCACCGAGGAGCCTGAAGAATCCACCAGCGAGGCTCCCGAAGAATC
CTCCAGCGAGGCGCCCGAAGAATCCACCACAGAGGAGCCCGAAGAATCGA
CACCGAGGCGCCTGTAGAATCCACAAGTGAGGCACCCGAAGACTCGACGA
CCGAGGCTCCCGAAGAATCCACAAGTGAGGCGCCGGAAGAATCCACTATC
GATTTCTTCAGCGGTCGCAAGCTTTCTAGACCAT
FMO12745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fst-RA | 1177 | CG9434-RA | 24..885 | 5..866 | 4205 | 99.3 | Plus |
| Fst-RA | 1177 | CG9434-RA | 656..815 | 685..843 | 370 | 82.5 | Plus |
| Fst-RA | 1177 | CG9434-RA | 704..860 | 637..792 | 370 | 82.8 | Plus |
| Fst-RA | 1177 | CG9434-RA | 656..794 | 709..846 | 295 | 81.3 | Plus |
| Fst-RA | 1177 | CG9434-RA | 728..866 | 637..774 | 295 | 81.3 | Plus |
| Fst-RA | 1177 | CG9434-RA | 760..863 | 645..748 | 250 | 82.7 | Plus |
| Fst-RA | 1177 | CG9434-RA | 675..767 | 751..843 | 225 | 82.8 | Plus |
| Fst-RA | 1177 | CG9434-RA | 776..866 | 637..727 | 200 | 81.3 | Plus |
| Fst-RA | 1177 | CG9434-RA | 656..746 | 756..846 | 185 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9645270..9646131 | 866..5 | 4155 | 99.3 | Minus |
| 3R | 32079331 | 3R | 9645295..9645451 | 792..637 | 345 | 82.8 | Minus |
| 3R | 32079331 | 3R | 9645340..9645499 | 843..685 | 345 | 82.5 | Minus |
| 3R | 32079331 | 3R | 9645313..9645491 | 846..669 | 335 | 80.4 | Minus |
| 3R | 32079331 | 3R | 9645289..9645467 | 822..645 | 320 | 79.9 | Minus |
| 3R | 32079331 | 3R | 9645289..9645427 | 774..637 | 270 | 81.3 | Minus |
| 3R | 32079331 | 3R | 9645361..9645499 | 846..709 | 270 | 81.3 | Minus |
| 3R | 32079331 | 3R | 9645292..9645395 | 748..645 | 250 | 82.7 | Minus |
| 3R | 32079331 | 3R | 9645388..9645480 | 843..751 | 225 | 82.8 | Minus |
| 3R | 32079331 | 3R | 9645289..9645379 | 727..637 | 200 | 81.3 | Minus |
| 3R | 32079331 | 3R | 9645409..9645499 | 846..756 | 185 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:30 has no hits.
FMO12745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:11 Download gff for
FMO12745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fst-RA | 19..892 | 1..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:07 Download gff for
FMO12745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fst-RA | 17..890 | 1..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:12 Download gff for
FMO12745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fst-RA | 21..894 | 1..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:12 Download gff for
FMO12745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9645261..9646133 | 1..874 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:07 Download gff for
FMO12745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5470983..5471855 | 1..874 | 98 | | Minus |
