Clone FMO12751 Report

Search the DGRC for FMO12751

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:51
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12054-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12751.5prime Sequence

961 bp (870 high quality bases) assembled on 2013-01-29

> FMO12751.5prime
CAGTCGACATGTCCTCGTCCAACCGCAGCACCACGCCAACAGGCAGCGAA
ATGGACGAGGACGAAATGGTGGTCACGGAGTCGGAGGATAGCAACGACTC
CTGGACCACCGAGGAGTTTAGCTCGGAGTTTATCATGCGCTACGGCAGCA
GGCATTCCGGTGGTGGAAGCAATGGCACGCCCGGCAATGAGAAACCCTTC
GCCTGCCCTGTTCCGGGATGCAAAAAACGTTACAAGAACGTCAACGGCAT
CAAGTACCATTCGAAGAACGGTCACAAAAAGGACGGAAGAGTGCGCAAGG
GCTACAAGTGTCACTGCGGTAAGAGTTACAAAACGGCCCAGGGCCTGAAG
AACCACGCGCTGCACACACACAACTCGCAGCCGGATAGTGTGCTGAATGC
CCAGCTGGCCAATGCGTTGGCCATAGGCGATGGGGCCAGCGCGGCCACGC
CTGTGGGCAGCAGCAACACCTCCTCCAATCCGAACCCGCCGCCCATCATT
CAGCGCAGCAACTCGCCGTCTCAGTCGCTGGGCTCGTTGAGTCCGTCGAG
CATCAGCAACATGTCGAGCAGCGCCAGCAGTTGCCATGGAGGCAGCGGCA
GTCTGTCGAACGGGAATAATGGCAACAATGGGAGCACTACTAGCAACACT
GCCATTCTCACTAGCAACGGGAATGTCCTGCAGCAGCTCAGTGCCGGGAA
TGTGGTCACCCTGACCAATCTTCCCACGCAACAGCATCAGCAGCAACAGC
CGCAGCCGCAACAGCAGCAGCACAGCAACTCCATCAAAACACTGCAACAG
AAACCTCTTACTCCTGCTCAAACACAGCAACCTCAGCCAATCCCCATCGT
AACCACGGCAGCAGCGATTCCAGCCAAGCCGCCCCACGACTCTCCTGTCC
GTTACAGAGGTCCACAGCATCGCTTTCAACGAAACTGCCAACCACCGTCA
TTCCCTGCCCA

FMO12751.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RF 2408 CG12054-RF 925..1879 9..961 4410 98 Plus
CG12054-RE 4280 CG12054-RE 925..1879 9..961 4410 98 Plus
CG12054-RB 2259 CG12054-RB 776..1730 9..961 4410 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31226565..31227078 288..800 2490 99.4 Plus
3R 32079331 3R 31226364..31226503 150..289 685 99.3 Plus
3R 32079331 3R 31226139..31226250 41..152 560 100 Plus
3R 32079331 3R 31228694..31228858 798..961 345 88.7 Plus
Blast to na_te.dros performed on 2014-11-28 18:42:06 has no hits.

FMO12751.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:15 Download gff for FMO12751.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RC 877..1834 1..960 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:34 Download gff for FMO12751.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 772..1729 1..960 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:32 Download gff for FMO12751.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 772..1729 1..960 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:32 Download gff for FMO12751.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31226141..31226249 43..151 100 -> Plus
3R 31226366..31226503 152..289 99 -> Plus
3R 31226567..31227078 290..800 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:34 Download gff for FMO12751.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27051863..27051971 43..151 100 -> Plus
arm_3R 27052088..27052225 152..289 99 -> Plus
arm_3R 27052289..27052800 290..800 99 -> Plus