FMO12758.5prime Sequence
335 bp (335 high quality bases) assembled on 2013-01-29
> FMO12758.5prime
CAGTCGACATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAGC
AGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAA
TGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAAA
AGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGCG
ATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAATC
TGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGGG
AAACTGACCGGAAAACGGCAAGCTTTCTAGACCAT
FMO12758.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17490-RC | 1394 | CG17490-RC | 217..525 | 9..317 | 1545 | 100 | Plus |
| CG17490-RD | 1342 | CG17490-RD | 149..457 | 9..317 | 1545 | 100 | Plus |
| CG17490-RF | 2953 | CG17490-RF | 1756..2039 | 9..292 | 1420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22540043..22540324 | 9..290 | 1410 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 42..82 | 171..130 | 108 | 76.2 | Minus |
FMO12758.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:11 Download gff for
FMO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17490-RD | 147..461 | 9..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:12 Download gff for
FMO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17490-RD | 147..461 | 9..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:14 Download gff for
FMO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17490-RD | 149..463 | 9..323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:14 Download gff for
FMO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22540043..22540324 | 9..290 | 100 | -> | Plus |
| 2L | 22547540..22547572 | 291..323 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:12 Download gff for
FMO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22432775..22433056 | 9..290 | 100 | -> | Plus |
| arm_2L | 22440272..22440304 | 291..323 | 93 | | Plus |
