Clone FMO12760 Report

Search the DGRC for FMO12760

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPde8-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12760.5prime Sequence

1106 bp (996 high quality bases) assembled on 2013-01-29

> FMO12760.5prime
CAGTCGACATGGGCTGTTCTCCGAGTACTTTGCCCCCCGCCCCTTCCGCT
GGTCAGACCGGCGAACGAGGATCCCTGCCGCTGGACGCCTCTGAAAAGGA
CGAGAGCCGCCTCTTCTGCATCAAGCTGCGGCGCAGCCGCCTGCGCCGCT
GCAGCTGTGGGGGCGTGACCTTGCAGCCCCCCAGCGACGGGAATGGCAGC
ACGGCCGGAGACAACCTGTGCGGCCAGGTGCTCCTCAATCCGCTGCAGAC
CAAGAGCGAGGCCGACTACGAAAAGCTGAGCACCGGCAAAAAGGACTCGA
TTGTGACGGTGGCCGCCCTGGGCAACTTTACACACAGCGTAGTGCGACGG
GCCACTGGAAGCACAGGCACATCGGGCACCAGTTCATCCGGCGGGAACAG
CCGTCCAGGTCACCGCAAGTCATCACTAGCCCTCGCTCTCACCCCGGAAG
ATGAGCCGATGGACGTCTACCAGCGAAATCTCATGGACCTGAAGTATCCA
ACCGTGCTACCACCGAATCCCCCACTTAAGGCCCTTCTGGTTTTCCACAA
GTCGGACAGCATCTGCGAGGCGATCACCGCGGCCTGCCAGCGCCACCAGC
TGGACGTTACGCTGGTCAAGTCCAAGGAGGAGGCCCTGGACACTCTGCAG
AAGTCGTACGCCACCGCCCAGTGCTACCACCTAATCATAATTGATGCGCG
CTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGAACCATTCGTCACA
CACACGGCCACCATTTAACGACAATAATTGCAGTCTGCAAGAAGAGTTTC
TTCGAAAAGGATGATGTGCTAATTGCTCTATTGGACGCTGGCGTTATAGA
TGCGTAGCGGAGACGACCAACCTGGCCATGTGCAGTGTGAACTGAAGCAG
ATACTGCACTCCATCATCCGGCCGCACATGTCATGTCCACTCAACAGGCC
TTCTACACGGCTCTGCATCGGCTAAAGAGGTGGTGCTCATCACGGACGAC
TTGCTGGCGGATTCAGTACGCGAACCTGCCACCGAAAGGCTGCTCACATG
CGGTTGACGAGAATCATTACAACAACTGGAGGACAATATTGTGTCGGACC
TTCCCA

FMO12760.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RK 5389 CG45019-RK 489..1589 8..1101 5135 98.5 Plus
Pde8-RI 5562 CG45019-RI 662..1762 8..1101 5135 98.5 Plus
Pde8-RN 3939 CG45019-RN 775..1875 8..1101 5135 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23665620..23665887 8..275 1340 100 Plus
2R 25286936 2R 23674412..23674619 529..736 1040 100 Plus
2R 25286936 2R 23671976..23672088 361..473 565 100 Plus
2R 25286936 2R 23665949..23666036 274..361 440 100 Plus
2R 25286936 2R 23675107..23675206 851..948 400 98 Plus
2R 25286936 2R 23675352..23675454 945..1046 340 95.2 Plus
2R 25286936 2R 23674802..23674863 735..796 310 100 Plus
2R 25286936 2R 23674283..23674343 471..531 305 100 Plus
2R 25286936 2R 23674929..23674980 795..846 260 100 Plus
Blast to na_te.dros performed 2014-11-28 18:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2149..2217 99..168 113 64.3 Plus

FMO12760.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:13 Download gff for FMO12760.5prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RK 483..1592 1..1105 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:21 Download gff for FMO12760.5prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 769..1878 1..1105 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:22 Download gff for FMO12760.5prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 769..1878 1..1105 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:22 Download gff for FMO12760.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23665614..23665887 1..275 98 -> Plus
2R 23665951..23666035 276..360 100 -> Plus
2R 23671976..23672088 361..473 100 -> Plus
2R 23674286..23674342 474..530 100 -> Plus
2R 23674414..23674619 531..736 100 -> Plus
2R 23674804..23674863 737..796 100 -> Plus
2R 23674931..23674985 797..850 98 -> Plus
2R 23675107..23675205 851..947 97 -> Plus
2R 23675355..23675465 948..1055 92 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:21 Download gff for FMO12760.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19553137..19553410 1..275 98 -> Plus
arm_2R 19553474..19553558 276..360 100 -> Plus
arm_2R 19559499..19559611 361..473 100 -> Plus
arm_2R 19561809..19561865 474..530 100 -> Plus
arm_2R 19561937..19562142 531..736 100 -> Plus
arm_2R 19562327..19562386 737..796 100 -> Plus
arm_2R 19562454..19562508 797..850 98 -> Plus
arm_2R 19562630..19562728 851..947 97 -> Plus
arm_2R 19562878..19562988 948..1055 92 -> Plus