FMO12760.5prime Sequence
1106 bp (996 high quality bases) assembled on 2013-01-29
> FMO12760.5prime
CAGTCGACATGGGCTGTTCTCCGAGTACTTTGCCCCCCGCCCCTTCCGCT
GGTCAGACCGGCGAACGAGGATCCCTGCCGCTGGACGCCTCTGAAAAGGA
CGAGAGCCGCCTCTTCTGCATCAAGCTGCGGCGCAGCCGCCTGCGCCGCT
GCAGCTGTGGGGGCGTGACCTTGCAGCCCCCCAGCGACGGGAATGGCAGC
ACGGCCGGAGACAACCTGTGCGGCCAGGTGCTCCTCAATCCGCTGCAGAC
CAAGAGCGAGGCCGACTACGAAAAGCTGAGCACCGGCAAAAAGGACTCGA
TTGTGACGGTGGCCGCCCTGGGCAACTTTACACACAGCGTAGTGCGACGG
GCCACTGGAAGCACAGGCACATCGGGCACCAGTTCATCCGGCGGGAACAG
CCGTCCAGGTCACCGCAAGTCATCACTAGCCCTCGCTCTCACCCCGGAAG
ATGAGCCGATGGACGTCTACCAGCGAAATCTCATGGACCTGAAGTATCCA
ACCGTGCTACCACCGAATCCCCCACTTAAGGCCCTTCTGGTTTTCCACAA
GTCGGACAGCATCTGCGAGGCGATCACCGCGGCCTGCCAGCGCCACCAGC
TGGACGTTACGCTGGTCAAGTCCAAGGAGGAGGCCCTGGACACTCTGCAG
AAGTCGTACGCCACCGCCCAGTGCTACCACCTAATCATAATTGATGCGCG
CTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGAACCATTCGTCACA
CACACGGCCACCATTTAACGACAATAATTGCAGTCTGCAAGAAGAGTTTC
TTCGAAAAGGATGATGTGCTAATTGCTCTATTGGACGCTGGCGTTATAGA
TGCGTAGCGGAGACGACCAACCTGGCCATGTGCAGTGTGAACTGAAGCAG
ATACTGCACTCCATCATCCGGCCGCACATGTCATGTCCACTCAACAGGCC
TTCTACACGGCTCTGCATCGGCTAAAGAGGTGGTGCTCATCACGGACGAC
TTGCTGGCGGATTCAGTACGCGAACCTGCCACCGAAAGGCTGCTCACATG
CGGTTGACGAGAATCATTACAACAACTGGAGGACAATATTGTGTCGGACC
TTCCCA
FMO12760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pde8-RK | 5389 | CG45019-RK | 489..1589 | 8..1101 | 5135 | 98.5 | Plus |
Pde8-RI | 5562 | CG45019-RI | 662..1762 | 8..1101 | 5135 | 98.5 | Plus |
Pde8-RN | 3939 | CG45019-RN | 775..1875 | 8..1101 | 5135 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23665620..23665887 | 8..275 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 23674412..23674619 | 529..736 | 1040 | 100 | Plus |
2R | 25286936 | 2R | 23671976..23672088 | 361..473 | 565 | 100 | Plus |
2R | 25286936 | 2R | 23665949..23666036 | 274..361 | 440 | 100 | Plus |
2R | 25286936 | 2R | 23675107..23675206 | 851..948 | 400 | 98 | Plus |
2R | 25286936 | 2R | 23675352..23675454 | 945..1046 | 340 | 95.2 | Plus |
2R | 25286936 | 2R | 23674802..23674863 | 735..796 | 310 | 100 | Plus |
2R | 25286936 | 2R | 23674283..23674343 | 471..531 | 305 | 100 | Plus |
2R | 25286936 | 2R | 23674929..23674980 | 795..846 | 260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2149..2217 | 99..168 | 113 | 64.3 | Plus |
FMO12760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:13 Download gff for
FMO12760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RK | 483..1592 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:21 Download gff for
FMO12760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RN | 769..1878 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:22 Download gff for
FMO12760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RN | 769..1878 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:22 Download gff for
FMO12760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23665614..23665887 | 1..275 | 98 | -> | Plus |
2R | 23665951..23666035 | 276..360 | 100 | -> | Plus |
2R | 23671976..23672088 | 361..473 | 100 | -> | Plus |
2R | 23674286..23674342 | 474..530 | 100 | -> | Plus |
2R | 23674414..23674619 | 531..736 | 100 | -> | Plus |
2R | 23674804..23674863 | 737..796 | 100 | -> | Plus |
2R | 23674931..23674985 | 797..850 | 98 | -> | Plus |
2R | 23675107..23675205 | 851..947 | 97 | -> | Plus |
2R | 23675355..23675465 | 948..1055 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:21 Download gff for
FMO12760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19553137..19553410 | 1..275 | 98 | -> | Plus |
arm_2R | 19553474..19553558 | 276..360 | 100 | -> | Plus |
arm_2R | 19559499..19559611 | 361..473 | 100 | -> | Plus |
arm_2R | 19561809..19561865 | 474..530 | 100 | -> | Plus |
arm_2R | 19561937..19562142 | 531..736 | 100 | -> | Plus |
arm_2R | 19562327..19562386 | 737..796 | 100 | -> | Plus |
arm_2R | 19562454..19562508 | 797..850 | 98 | -> | Plus |
arm_2R | 19562630..19562728 | 851..947 | 97 | -> | Plus |
arm_2R | 19562878..19562988 | 948..1055 | 92 | -> | Plus |