Clone FMO12767 Report

Search the DGRC for FMO12767

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:67
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCsp-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12767.5prime Sequence

479 bp (479 high quality bases) assembled on 2013-01-29

> FMO12767.5prime
CAGTCGACATGAGCGCACCTGGCATGGACAAGAGAAAACTGTCGACATCT
GGCGACTCGCTTTACGAGATCTTAGGACTTCCGAAGACAGCCACCGGAGA
TGATATTAAAAAGACTTACCGGAAACTCGCACTCAAATACCATCCCGATA
AGAACCCGGACAATGTGGATGCGGCTGATAAGTTCAAGGAAGTCAACCGG
GCCCACTCGATATTGAGCGACCAGACGAAGCGCAACATATACGACAACTA
CGGCTCTTTGGGCTTGTACATAGCCGAGCAGTTTGGCGAGGAGAATGTCA
ACGCATACTTCGTGGTCACTTCACCGGCTGTAAAGGCGGTGGTTATCTGC
TGTGCCGTGATCACTGGATGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTG
CAACTTCTGCTGCGGCAAGTTCAAGCCGCCGGTCAACGAGTCGCACGATC
AGTATTCACATCTGAATGAGGACGTTGAC

FMO12767.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
Csp-RC 2226 CG6395-RC 186..656 9..479 2355 100 Plus
Csp-RA 2832 CG6395-RA 186..656 9..479 2355 100 Plus
Csp-RE 2895 CG6395-RE 186..644 9..467 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22269572..22269727 181..336 780 100 Plus
3L 28110227 3L 22269353..22269491 44..182 695 100 Plus
3L 28110227 3L 22269787..22269921 334..468 675 100 Plus
3L 28110227 3L 22267753..22267788 9..44 180 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:43:16 has no hits.

FMO12767.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:23 Download gff for FMO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
Csp-RA 179..656 1..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:22 Download gff for FMO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
Csp-RA 179..656 1..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:14 Download gff for FMO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
Csp-RA 179..656 1..479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:14 Download gff for FMO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22269353..22269491 44..182 100 -> Plus
3L 22269574..22269726 183..335 100 -> Plus
3L 22269789..22269928 336..479 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:22 Download gff for FMO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22262453..22262591 44..182 100 -> Plus
arm_3L 22262674..22262826 183..335 100 -> Plus
arm_3L 22262889..22263028 336..479 96   Plus