FMO12767.5prime Sequence
479 bp (479 high quality bases) assembled on 2013-01-29
> FMO12767.5prime
CAGTCGACATGAGCGCACCTGGCATGGACAAGAGAAAACTGTCGACATCT
GGCGACTCGCTTTACGAGATCTTAGGACTTCCGAAGACAGCCACCGGAGA
TGATATTAAAAAGACTTACCGGAAACTCGCACTCAAATACCATCCCGATA
AGAACCCGGACAATGTGGATGCGGCTGATAAGTTCAAGGAAGTCAACCGG
GCCCACTCGATATTGAGCGACCAGACGAAGCGCAACATATACGACAACTA
CGGCTCTTTGGGCTTGTACATAGCCGAGCAGTTTGGCGAGGAGAATGTCA
ACGCATACTTCGTGGTCACTTCACCGGCTGTAAAGGCGGTGGTTATCTGC
TGTGCCGTGATCACTGGATGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTG
CAACTTCTGCTGCGGCAAGTTCAAGCCGCCGGTCAACGAGTCGCACGATC
AGTATTCACATCTGAATGAGGACGTTGAC
FMO12767.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csp-RC | 2226 | CG6395-RC | 186..656 | 9..479 | 2355 | 100 | Plus |
Csp-RA | 2832 | CG6395-RA | 186..656 | 9..479 | 2355 | 100 | Plus |
Csp-RE | 2895 | CG6395-RE | 186..644 | 9..467 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22269572..22269727 | 181..336 | 780 | 100 | Plus |
3L | 28110227 | 3L | 22269353..22269491 | 44..182 | 695 | 100 | Plus |
3L | 28110227 | 3L | 22269787..22269921 | 334..468 | 675 | 100 | Plus |
3L | 28110227 | 3L | 22267753..22267788 | 9..44 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:43:16 has no hits.
FMO12767.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:23 Download gff for
FMO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RA | 179..656 | 1..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:22 Download gff for
FMO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RA | 179..656 | 1..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:14 Download gff for
FMO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RA | 179..656 | 1..479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:14 Download gff for
FMO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22269353..22269491 | 44..182 | 100 | -> | Plus |
3L | 22269574..22269726 | 183..335 | 100 | -> | Plus |
3L | 22269789..22269928 | 336..479 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:22 Download gff for
FMO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22262453..22262591 | 44..182 | 100 | -> | Plus |
arm_3L | 22262674..22262826 | 183..335 | 100 | -> | Plus |
arm_3L | 22262889..22263028 | 336..479 | 96 | | Plus |