FMO12768.5prime Sequence
953 bp (953 high quality bases) assembled on 2013-01-29
> FMO12768.5prime
CAGTCGACATGGCCAGATATCAGAGTAGCCTTAGCCTCGGAATCCTTGTG
GTCCTGCTAATCGATCAGCTGGCCAACGCCCAGTTCGTTCCGGGCCCAAT
CTCTGGACCAATTCCCCGCCAGCAGAGATCGCTCTTTGGGTCCGGTCCGC
CGCCCGGTTGGAGTAGCGGTGGCCTCAGTCACGGCTGGAATAGTCCCAGC
TTTGAGTTTAGCCCGCTGCCGCCATCGCACAGTTCGCATGTGACCAAGGA
CGAGTTGCTGGCCCTGCTAGCCGCCTGGAAGGATGTGGCCAAGCCGACGA
CTCCGGCACCGGAGCCAGAGCCCGAGGAGCCCGAACCCGAGCCGGAGGCC
ACAACGCCAGCGCCGCCAGAGGATGTGGACGAACCGGAACCGGAGCCCGA
GGCACCGGCACCGGCACCGGCACCAGAGGCGCCAGCTGGTCCACCACCCG
GCGTTCCCGTCACCGTCTCCCTGCCCGCCCTGGTGCCCATTCAATTGGCG
GCCATGTGGCAACAGCCGGCGCTGGGAGCAGCGGCCGGCGGACTGGGTCC
TCTAAATCTGGGCGGCCTGGGTCTGGGCGGTGGCATTGCATTGAACACGC
TCGGCGGCGGTGCGGTAGCAGCCGGAGGAGCTATAGCGGCCGGAGGCGGT
GGAGCGGCGGCCGCCGGAGCAGCAGCAGCAGCGTCACGTTCCGGAGTGGC
ACGCCCTCGAGCCCGGGCCAGGATCGGAGGACGTGCGTCCAATGCCCAGC
AGCCCGCCATACGTTTCCCGGTGGCCAATCCGCGCAGCTTCACCTCGAAC
AACTATGTGGCGCCCAGGCCGCGTTATTATCGCGATACGGAGCCCATGCG
CGTCAACGTAATGGCACCACCGCCGCCGTCGCCCTACCAAATGGCCATAT
CCAGGGTCCCGTTCAGCTGGTGCCGCTACTGGCAAGCAAGCTTTCTAGAC
CAT
FMO12768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42449-RA | 1146 | CG42449-RA | 22..951 | 9..935 | 4575 | 99.7 | Plus |
| CG42449-RB | 1217 | CG42449-RB | 22..863 | 9..850 | 4210 | 100 | Plus |
| CG42449-RB | 1217 | CG42449-RB | 934..1022 | 850..935 | 370 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5683261..5684102 | 9..850 | 4210 | 100 | Plus |
| X | 23542271 | X | 5684173..5684248 | 850..924 | 330 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..753 | 684..574 | 132 | 62.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2860 | 609..686 | 120 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6849 | 613..686 | 109 | 60.8 | Plus |
FMO12768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:24 Download gff for
FMO12768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42449-RA | 14..956 | 1..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:28 Download gff for
FMO12768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42449-RA | 14..956 | 1..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:20 Download gff for
FMO12768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42449-RA | 14..956 | 1..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:20 Download gff for
FMO12768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5683253..5684102 | 1..850 | 99 | -> | Plus |
| X | 5684174..5684266 | 851..941 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:28 Download gff for
FMO12768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5577286..5578135 | 1..850 | 99 | -> | Plus |
| arm_X | 5578207..5578299 | 851..941 | 93 | | Plus |
