FMO12771.5prime Sequence
1091 bp (1033 high quality bases) assembled on 2013-01-29
> FMO12771.5prime
CAGTCGACATGTCCAGTATTTGGACAAAAAGGAAGGACTCTTTCTGCAAT
AACGAAAATATAAGGGCTCAGAAGTTCGAGGATGTGATTGTAATCGATGA
CAATGATCGTGGCGACTCTCTCCGGAGTGTAAAATCCGAGCCCCCTGAAG
AAAAGCCCCGCTTATCTCCACAGGACGCTAATCAAAAACGTGCAGTAAAG
GAGGAGAAGGAAATGTCCAGGCGCGCACGCGCTCGAGCCAAGAAAATACG
GAATACAGAGGCAAGAGCAGCGAAATCGGTGGTTACCAGGGGTGCGGGTA
AAAAAGCAAGGAAGCGTAAGAAGCAAAATAAAGCGGCACTCAAGAAGGCT
AGTGAACTTGAACCCAAAAAGGCAAAGGGCTCCAAGGAGGCTAGTGCCCA
CAAGAAGGCAAAGGGACCCAAGAATACAAGTCCTCCTATGGCTGCGAAGC
CCAATTTGGCAAAGAGTGACAACCTGACGATGGCCCTGGTGGACGAGCTC
CACGAAGACGGCCGTCTGCTTAACGAAAGGTGGCAGGAGGTCGAGGCCCA
GCTGGCGTACATGGTGACTGACAGAGTCATGGCCATGCCGGGGGGTCCCG
TCCCGTCCTTCGATAGCTCAGACGTAGTTCGTGGCCACCGAGTGATCCGG
TGCGAAGACGGATTTTCAAAGGTATTCCTGTCGGACTGTGTTGCCGCGAT
TAGCAACTCGTGGCATGACATGCGCATCAAGCTCGTCCATGTCAGCGATG
TACCATTTGCGCCTCAGGCGCGCATCTGGTTGCCCACGGGTCAAACGGAC
CACAACCGGATCATGATCTGCTTGAGAGCCCAGAACCTAAATGTGGACAT
GTCGGACTGGTCCATCCTCAGGCGGAGGAGTCATGAGATCAGTCAGAGTT
TCCTGCTCCTTATCACCGGAGTGCATCCCGCAACTGGATGCAGTGGACTA
CAGTTGCGCTATGGCATACGAATGGCCCAGATCCAGCTCATTTAGCGAAG
CAGACGATTGCATCGGAGTTCGACACTACCACCCAATTTGCCATTTCCCC
ATTTCAAGCTTCTAGACATCGTGAGCGCGGTCCAAGTAAGT
FMO12771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7824-RA | 1229 | CG7824-RA | 66..1122 | 9..1053 | 4980 | 98.8 | Plus |
| CG7824-RC | 1161 | CG7824-RC | 162..1054 | 173..1053 | 4160 | 98.5 | Plus |
| CG7824-RC | 1161 | CG7824-RC | 66..162 | 9..105 | 485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29857763..29858719 | 1050..105 | 4260 | 98.5 | Minus |
| 3R | 32079331 | 3R | 29858775..29858871 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:42:37 has no hits.
FMO12771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:19 Download gff for
FMO12771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7824-RA | 46..1104 | 9..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:56 Download gff for
FMO12771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7824-RA | 66..1124 | 9..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:51 Download gff for
FMO12771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7824-RA | 66..1124 | 9..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:51 Download gff for
FMO12771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29857756..29858718 | 106..1057 | 98 | <- | Minus |
| 3R | 29858775..29858871 | 9..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:56 Download gff for
FMO12771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25683478..25684440 | 106..1057 | 98 | <- | Minus |
| arm_3R | 25684497..25684593 | 9..105 | 100 | | Minus |
