Clone FMO12772 Report

Search the DGRC for FMO12772

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8534-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12772.5prime Sequence

821 bp (821 high quality bases) assembled on 2013-01-29

> FMO12772.5prime
CAGTCGACATGGCCGATTTACTCAATGGAACCCTAATCATTTCGGAGGAT
CCTGTCCGCCTGCCACTCATCGGAAGTCCATGGCCATCGCTGACCATCGT
TTCGCTCTATCTGCTGTTTGTCTTGAAGTTAGGCAGGAAGTTCATGGAGA
ACAGAAAGCCCTACGATCTCCGCAGAGTCATCAGGGCATACAACATTATG
CAGATTGTCTACAACGGCGTTATTCTGATAGCGGGTCTTCACTTTTTGTT
CGTCCTGAAGGCCTACGACCTGCGATGCATCACCAAACTGCCGCTGGATC
ACGAGCTGAAGAGCCGAGAAAGATGGTTGACCTACTCGTACTTCTTCAAC
AAGTTCATGGATCTGCTGGAGACTGTGTTCTTTGTGCTGCGCAAGAAGGA
TCGCCAGATATCCTTCCTGCACGTCTTCCACCACCTGGTGATGTCCTTTG
GCGGATACCTGCACATTACCTTCAACGGCTATGGAGGCACTCTGTTCCCA
TTATGCCTGCTCAATGTGGCGGTCCATGTGATCATGTACGCCTACTACTA
CCTGTCCTCCGTCAGCAAGGATGTGCAGACGAGTCGGTGGAAGAAGTACA
TCACCATTGTCCAGCTGGTCCAGTTCATCCTGGTGCTGGCGAACTTTAGC
TACACCCTGATGCAGCCCGATTGCAATGCCTCCCGAACTGTGATATATAC
TGGCATGTTCATTTCCACGACCTTCATCCTGATGTTTGCCAACTTCTACA
TTCACAACTACATACTGAATGGAAGCAAACAGAAGAGCGCGTTGAAATCC
GATGCAAGCTTTCTAGACCAT

FMO12772.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8534-RA 990 CG8534-RA 59..853 9..803 3975 100 Plus
CG9458-RA 900 CG9458-RA 281..439 276..434 390 83 Plus
eloF-RA 933 CG16905-RA 367..618 378..626 385 77.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9813232..9813802 233..803 2855 100 Plus
3R 32079331 3R 9812805..9813030 9..234 1130 100 Plus
3R 32079331 3R 9819375..9819533 434..276 390 83 Minus
3R 32079331 3R 9817871..9818029 434..276 360 81.8 Minus
3R 32079331 3R 9814592..9814843 378..626 355 77 Plus
3R 32079331 3R 22533152..22533236 434..350 215 83.5 Minus
3R 32079331 3R 22555518..22555601 351..434 195 82.1 Plus
Blast to na_te.dros performed on 2014-11-28 18:42:44 has no hits.

FMO12772.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:19 Download gff for FMO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8534-RA 57..859 6..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:01 Download gff for FMO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8534-RA 57..859 6..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:54 Download gff for FMO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8534-RA 57..859 6..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:54 Download gff for FMO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9812803..9813029 6..233 99 -> Plus
3R 9813233..9813808 234..809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:01 Download gff for FMO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5638525..5638751 6..233 99 -> Plus
arm_3R 5638955..5639530 234..809 99   Plus