FMO12774.5prime Sequence
913 bp (913 high quality bases) assembled on 2013-01-29
> FMO12774.5prime
CAGTCGACATGAAATCTATCGTATTTTTATTGGCATTACTTCTAAACGCG
ACAAGGAGTTATCGGGAAATTGTGAAAATGCCTGAGAAACAAGTGGCACC
TGTAATTAGTAATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAA
TTTCTGAAAGTCCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCT
CCCATTGCGGATAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGC
CATACTGCACAAGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCT
CGGGTCGCGGACTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATT
ACATATGCTGGTAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAG
GCACGATTACGAGCTACCCACGGAGATCCAGAAAAACTACACACAAATGG
TTAGGGAGCTCAAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGAT
AAGAAGGTGTCACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAA
GGATCAGCAAAAGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCC
GTGCGAATCAGGCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGG
AACAAGGGAGAGGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAA
TTGGTCGCAGAAAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATG
AAGATGCCATGAGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCT
GCTGATGCCCAGATTCAAACTTATGCGGATTTCCGGTTGCCCAAGCAGCT
GTAATGACCGATCTTCTCAAATGGATAGCCAATGTGTATGTTTCTGCAAG
CTTTCTAGACCAT
FMO12774.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5171-RD | 1156 | CG5171-RD | 104..991 | 9..895 | 4415 | 99.9 | Plus |
| CG5171-RF | 1182 | CG7-RF | 131..1017 | 10..895 | 4410 | 99.9 | Plus |
| CG5171-RE | 1137 | CG5171-RE | 86..972 | 10..895 | 4410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7403541..7404166 | 142..767 | 3130 | 100 | Plus |
| 2L | 23513712 | 2L | 7403229..7403364 | 10..145 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 7404230..7404361 | 765..895 | 610 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:43:55 has no hits.
FMO12774.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:28 Download gff for
FMO12774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5171-RD | 104..991 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:46 Download gff for
FMO12774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5171-RD | 104..991 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:41 Download gff for
FMO12774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5171-RD | 104..991 | 9..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:41 Download gff for
FMO12774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7403225..7403361 | 4..142 | 97 | -> | Plus |
| 2L | 7403542..7404163 | 143..764 | 100 | -> | Plus |
| 2L | 7404230..7404366 | 765..900 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:46 Download gff for
FMO12774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7403225..7403361 | 4..142 | 97 | -> | Plus |
| arm_2L | 7403542..7404163 | 143..764 | 100 | -> | Plus |
| arm_2L | 7404230..7404366 | 765..900 | 96 | -> | Plus |
