FMO12776.5prime Sequence
1119 bp (1001 high quality bases) assembled on 2013-01-29
> FMO12776.5prime
CAGTCGACATGGACGCGACATTTCACCAAACCATGGAGAGCTTGCAGTTG
CCCAAGGAGCTGTACTGGGACCTCAAGATGGAGCCACAATCCCCAACATC
GGTTTTGGGCTCCGATCTGTTTCCGCTCACTGACTCAAACGATACGGAGT
GGCTGTATGACGATAACTTTGCAAATGGCATTACTCTTATTGGCGATGAT
GAAGCCTTGACCCTGGAAGAGGTAGCTTCTCTCCAGTTGCTTAGTGATGA
GGAGATGGTTGTGGAGATCTTTGACCTGAAAGATGAAGAATGTCTTTTGG
ACCAAAAGGCAACGTTGAACTGCATCGATTATGACAGTAACAGCTTTCAG
CCGAACATTAATGTTATAACTCAGGCCATAGTACCCGCAAACAAAGTACA
ATTCGGTGCATCTTCAGACGCTGCTTCGCTTCCTTCTGCCGCTGATTACC
AGCTCAATGATGGCCCATCCCTTATTCTACAGCAATTAACGCCGCCGCAG
TCTCCGCCTCAATTCGATGCTTACAAACAGGCGGGCGATGCACAGCCAAA
ACCCGTGCTCGTAAAGGCCGAGCAAAAGGTGCAATGCTATACTCCTGATG
TTACACACGCAGCATCTGCCACGCCCTTTAACTTTACCAACTGGGTAGGC
GGCAGCGAAATTGCCCGAGAGAACCAACTGGTCGATGATATCGTCAATAT
GCGTGCTAAGGAGCTCGAATTGTCCACGAACTGGCAGCAGCTCAATGAGG
ACTGCGAGTCTCACGCGTCTTCATCTTTAGACAGCAGAAGCACAGGAAGC
GGAGTGTGCAGCAGCATCGCCGACGCCGACGAGGACTGGGTTCCAGAGCT
TATCAGCAGCTCCTCCTCGCCAGCTCCTACACCATCGAGCAGTCTGCGTC
CCAGCCAAAAAGCGTACTCGCACTTACGGGCGCGGTGTAGAGGATCGAAA
GATCAGGAAAAGGAGCAGACAAGAACGCTGCCACACCGATATTCGCCAGA
AAAGAAACTTGAAATGGAGAATGTGCTGGGGCGAGGAGCTTGTGCTGTCT
AAGAAAACGAGCAGCTTTCGTCGCATCTGCAGGAGCGACCACAAATGCGC
TATCTGCCCAGCTGATCCG
FMO12776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crc-RE | 2244 | CG8669-RE | 629..1743 | 9..1116 | 5185 | 98.4 | Plus |
| crc-RA | 1905 | CG8669-RA | 290..1404 | 9..1116 | 5185 | 98.4 | Plus |
| crc-RF | 1878 | CG8669-RF | 458..1377 | 204..1116 | 4210 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21318484..21318993 | 581..1087 | 1995 | 96.7 | Plus |
| 2L | 23513712 | 2L | 21318125..21318419 | 287..581 | 1475 | 100 | Plus |
| 2L | 23513712 | 2L | 21311875..21312044 | 9..178 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 21312097..21312208 | 177..288 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:31:06 has no hits.
FMO12776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:06 Download gff for
FMO12776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crc-RA | 294..1419 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:22 Download gff for
FMO12776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crc-RA | 282..1407 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:33 Download gff for
FMO12776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crc-RA | 282..1407 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:33 Download gff for
FMO12776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21311867..21312043 | 1..177 | 97 | -> | Plus |
| 2L | 21312098..21312208 | 178..288 | 100 | -> | Plus |
| 2L | 21318127..21318419 | 289..581 | 100 | -> | Plus |
| 2L | 21318485..21319029 | 582..1119 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:22 Download gff for
FMO12776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21311867..21312043 | 1..177 | 97 | -> | Plus |
| arm_2L | 21312098..21312208 | 178..288 | 100 | -> | Plus |
| arm_2L | 21318127..21318419 | 289..581 | 100 | -> | Plus |
| arm_2L | 21318485..21319029 | 582..1119 | 96 | | Plus |
