FMO12778.5prime Sequence
761 bp (761 high quality bases) assembled on 2013-01-29
> FMO12778.5prime
CAGTCGACATGGCCAAGCCCAAGTCAAAATCGACTAGCAAAGGTTCCACT
TCGCCGGGTTTTAACAAGGCGGTGCAGTTGCTCCTCCATTTTACAGCCGT
GCTGCAGTTCAACTATGGCGTGTACATCTTCCACACACTCGACATGCCCA
ACACGGTGCCCTTCGGCGGAAAATTTAAGTTCCTAACTTTTATTTGTGCG
ATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGG
CACTAATGAGCTGACACCCAAGAAACCTCCGGCGGTTCGCAGGTTCAAGG
ACTGGCTGATGGCTACATTGGCCTTTCCAGTGGCTATCAATGTGGGCGTG
ACCTTCTGGACACTGTACGCTATCGACAGGGAGCTAGTCTTCCCCAAGGT
TCTGGACCCCGTGTTCCCCAGCTGGCTCAACCACGTCCTGCACACCAACA
TAGTGGTTTTCATCATCCTGGAGCTGTTCATCTCGTACAGGTCGTACCCA
AAACGAAGCCAAGGACTCGCAGGACTGGCCATTTTCATGGGCGCCTACCT
GGTTTGGATTCACGTGGTGAAGCACTACTCGGGTGTGTGGGTGTATCCAG
TGCTCGAGGTTCTCCAGCTTCCGCAACGCATCCTGTTTTTTGCGGCCGTC
GTTGGATTCACGCTGTCACTTTACCTGCTGGGCGAGTTCCTCAACAATAC
CGTCTGGGCCAAGGAAGTGAAGTTGGCCAAGCGCAAATCCAACGCAAGCT
TTCTAGACCAT
FMO12778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3625-RA | 995 | CG3625-RA | 32..768 | 7..743 | 3685 | 100 | Plus |
| CG3625-RB | 1341 | CG3625-RB | 291..837 | 197..743 | 2735 | 100 | Plus |
| CG3625-RE | 1401 | CG3625-RE | 354..897 | 200..743 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 283889..284213 | 743..419 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 284748..284969 | 421..200 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 286303..286500 | 204..7 | 975 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:31:18 has no hits.
FMO12778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:07 Download gff for
FMO12778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3625-RA | 22..764 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:30 Download gff for
FMO12778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3625-RA | 26..768 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:40 Download gff for
FMO12778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3625-RA | 26..768 | 1..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:40 Download gff for
FMO12778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 283889..284210 | 422..743 | 100 | <- | Minus |
| 2L | 284748..284968 | 201..421 | 100 | <- | Minus |
| 2L | 286307..286505 | 1..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:30 Download gff for
FMO12778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 283889..284210 | 422..743 | 100 | <- | Minus |
| arm_2L | 284748..284968 | 201..421 | 100 | <- | Minus |
| arm_2L | 286307..286505 | 1..200 | 98 | | Minus |
