FMO12780.5prime Sequence
617 bp (617 high quality bases) assembled on 2013-01-29
> FMO12780.5prime
CAGTCGACATGATTCGAGGCCTGGTGATTCTTGTTTTGGCCCTGGCCAAC
ACTTGGGCAACGGACTACAACGCTCTGATTGACGATGAGGGCATCTACGT
GAAGTGCTCAGAAGCCCCAGCCGGTACCCTTGGTCCCCGCGATGTATTTA
ACATTGACAATATGGTGATGCATATGGAACCAGAAGGCATTTACGTATCG
GGGAATATGACCGTTAAACTCAACTTTCTACCCTCCGATCGCATTTCCGC
TAGGTTCAGCGTGATGCACTATGAACGTGGTAGTTGGCAACCCACAATGT
TCAACCTTCACTCCCCGAACTTTTGTGAGGTGATGTTTGACGAAGATCAA
TACTGGTTCAAGTATTGGTTCAGATATATACGAAACAAAGAGGAGATTCG
AGAAAAATGCTTGAAAGTGAAAGATACCGTGCTAGTGTATGATGAGTTCT
TGATGGTCCTGCACCTAGAAAATGTCAATACCTCAAACTTACAGGGGCGC
TACAAGGCGGTGATTACTCTGGAGGCTTTCGATGAACATAATGTGCGACG
ACCATCATCCCTCTGCGTTGAAATAAGAGGCGACCTTGAGAGGGTTACCG
CAAGCTTTCTAGACCAT
FMO12780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB38b-RA | 695 | CG33321-RA | 9..599 | 9..599 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20817022..20817262 | 249..9 | 1205 | 100 | Minus |
| 2L | 23513712 | 2L | 20816785..20816961 | 425..249 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 20816552..20816725 | 599..426 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:31:31 has no hits.
FMO12780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:09 Download gff for
FMO12780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB38b-RA | 1..604 | 2..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:38 Download gff for
FMO12780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB38b-RA | 1..604 | 2..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:47 Download gff for
FMO12780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB38b-RA | 1..604 | 2..607 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:47 Download gff for
FMO12780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20817023..20817271 | 1..248 | 98 | | Minus |
| 2L | 20816547..20816725 | 426..607 | 97 | <- | Minus |
| 2L | 20816785..20816961 | 249..425 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:38 Download gff for
FMO12780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20816547..20816725 | 426..607 | 97 | <- | Minus |
| arm_2L | 20816785..20816961 | 249..425 | 100 | <- | Minus |
| arm_2L | 20817023..20817271 | 1..248 | 98 | | Minus |
