FMO12785.5prime Sequence
1137 bp (1041 high quality bases) assembled on 2013-01-29
> FMO12785.5prime
CAGTCGACATGTCGAACGCTAAGCTGGACAGTAAGGTCGTTCAGAACCTG
AAGGACGTGGCCCAAAAGCTGCGGATCCACTCGATCACCTCGACGCAGGC
GGCCAAGTCGGGACATCCGACGTCCTGTGCCTCGTTGGCCGAGATAATGA
CGGTGCTGTTCTTTCAGCAGATGCGCCTAAATCTGAAGCATCCTCGCGAT
CCTTCCAGCGATCGATTGGTTCTGTCCAAGGGACATGCTGCACCCATTCT
GTACGCCGTTTGGGCGGAGGCTGGACTCTTCCCGGTGGAGGAGCTGCGAA
ATTTGCGCAAGGTGGACAGTGATCTAGAGGGTCATCCCACTCCACGGCTG
AGTTTCGTCGATGTGAGCACCGGATCCCTGGGACAGGGCATCTCCGTGGC
CGCTGGAATGGCCTATGTGGGCAAACACCTGGACAAGGCCGACTATCGTA
CATATGTGATCGTGGGCGATGGCGAGGCTACCGAAGGAGCAGTCTGGGAA
TCGCTCCACTTTGCCGGCCACTACTGCCTGGACAACCTGTGCGTAATCTT
CGATATGAACAAGATCTTCTGCTCGGACATAGGCACTGAAATGGAGGTTT
ATCGGGAGAGGTTGGACGCCTTCGGGTTCAATGCCCTAGTCTTAAATGGC
CACGATATTGATGAGCTGGCCAAGGCCTTCATTAATGCGGCCAGCACGAA
GGGTAAGCCCACGGCTCTTTTAGCCAGGACGACTAAGGGAAAGGACTTTC
TGGGCATCGAAGAATCGAAGAAATGCATGCACAGCCACTGGGTAAGAGGG
CCGAATCTGCAATCAAGCATTTGCAGATGAAAATCCGCAAATCCCAACGT
CCGCCTGACACCCAAAAAGTGGGGAAGTGCGGCCACGCCCCCGAGGTGCA
TATTAACAATATAATGCTGTGCAGTCCGCCAATTATCGGCTGGGAGATTC
GGTAGCCCCACGCTTAGCCTACGGAACCGCCTTGGCCAAATCGCTGCTGA
TATTCTCGGGTAATAGCCTTGATGGCGAATACAAGAACTCGACTATGCGG
ACAAATGAGATTGCATTTCGAGCGTTCATCGAGGCTTCCACAGCCAGCGA
TCTGTGTGGCGTGCGTGGGAACACTGTCGACGTGCCA
FMO12785.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5103-RA | 2074 | CG5103-RA | 35..1126 | 9..1088 | 4945 | 97.7 | Plus |
| CG8036-RC | 2235 | CG8036-RC | 237..759 | 38..560 | 1010 | 79.5 | Plus |
| CG8036-RB | 2493 | CG8036-RB | 495..1017 | 38..560 | 1010 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18293410..18294228 | 826..9 | 3985 | 99.4 | Minus |
| 3R | 32079331 | 3R | 8671712..8672158 | 114..560 | 915 | 80.3 | Plus |
| 3L | 28110227 | 3L | 18293113..18293348 | 1054..824 | 715 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:31:57 has no hits.
FMO12785.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:12 Download gff for
FMO12785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5103-RA | 212..1314 | 3..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:53 Download gff for
FMO12785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5103-RA | 29..1131 | 3..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:01 Download gff for
FMO12785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5103-RA | 29..1131 | 3..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:01 Download gff for
FMO12785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18293070..18293345 | 827..1093 | 91 | <- | Minus |
| 3L | 18293410..18294234 | 3..826 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:53 Download gff for
FMO12785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18286170..18286445 | 827..1093 | 91 | <- | Minus |
| arm_3L | 18286510..18287334 | 3..826 | 99 | | Minus |
