FMO12787.5prime Sequence
1039 bp (1004 high quality bases) assembled on 2013-01-29
> FMO12787.5prime
CAGTCGACATGACTGCTTTGACATTGCTACGACGATCAGTTACGGCGGTC
AGCTACGACGGTTACGCCCACGTTTGCGTTACGAATTGGCGGTTTCTGCC
CCAGCTTCAAAGGTGCCAATTGCATTTGCACGTTAGTGGGCGACATGCTG
CTGTACTTTTGTCCAGCAAAACAACAGCAACAACAGCAACATCAGCTGTT
GCAGCTGCGCAGGCGCCAAATGCGTATGCTAATGTTGGCGGCTTTTCCAT
CACGTACCGCACCATGTCCGCCGCTGCTCCGAAACTGGTGGCCGTTGCCG
AGTCGCGTCGTTTCATGATCGACTGCTTCAAGGCGGTGAAGGTGCCCCAG
GCCCATGCCGAAGCCCAGGCGGATCTCCTGGTGGCTGCGGACCATCGGGG
GCACTTCAGCCATGGCATGAACCGCCTTGAGATGTACATCAACGATCTGG
CCATCAACTCCACGGACGGAGCGGCTGTGCCCAAGATCCTAAAGGAAACT
CCGGCCACCGCCTGGGTGGATGGCCTGAATGGACTTGGTGCCGTCGTGGG
CAACTACTGCATGGATCTGGCCATCAAGAAGGCCAAGACGGTGGGAGTTG
GCTGGGTTTGTGCCAAGGGATCGAACCACTATGGCATGGCTGGTTGGTAT
GCCATCAGGGCCATGGATCAGGGTCTGGTGGGCATGTCCATGACGAATAC
CTCGCCGCTGATGGCACCCACACGCGCCAAGGAGGCTGCTCTGGGCACCA
ATCCCTTGTCCCTGGGTGCCAATGCCACCAACGGTGATAAGTTCCTGCTG
GACATGGCCACCACCAGCCGTGGCCGTGGGAAAGATCGAGATCCAGCGCA
GGAAGGGAGCTCCTCTGCCCGACGGATGGGCTCAGGATCCCAGTGGTGAA
TTGACCCACGATGCAGAGCTGGGTTTCAGCACTGGGTGCCCGATGCCATT
AGGAGGATCCGAGCTGACCTCCGGCTACAAGGTTACGGCCTTGGCGCCAT
GGTGGAACTTTCTGTCCGGGTGTCATGTCCGGAACCCAT
FMO12787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10512-RA | 2010 | CG10512-RA | 168..1194 | 5..1033 | 4975 | 99.1 | Plus |
| CG10512-RD | 1659 | CG10512-RD | 52..843 | 240..1033 | 3815 | 99 | Plus |
| CG10512-RC | 1704 | CG10512-RC | 97..888 | 240..1033 | 3815 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21205676..21206467 | 240..1033 | 3715 | 99 | Plus |
| 3L | 28110227 | 3L | 21203087..21203323 | 5..241 | 1170 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 18:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2363 | 164..212 | 141 | 80.4 | Plus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 1747..1784 | 169..206 | 127 | 81.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2421 | 164..196 | 122 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6818 | 164..205 | 122 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2372 | 170..212 | 118 | 77.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1130..1164 | 164..197 | 118 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2421 | 170..205 | 117 | 80.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1148 | 170..205 | 117 | 80.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9342..9440 | 103..204 | 115 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6770 | 163..208 | 114 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6784 | 164..212 | 114 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6805 | 164..212 | 114 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6917 | 164..205 | 113 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6854 | 164..208 | 110 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1558..1586 | 170..198 | 109 | 86.2 | Plus |
FMO12787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:12 Download gff for
FMO12787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10512-RA | 164..1198 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:59 Download gff for
FMO12787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10512-RA | 164..1198 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:06 Download gff for
FMO12787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10512-RA | 164..1198 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:06 Download gff for
FMO12787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21203083..21203322 | 1..240 | 98 | -> | Plus |
| 3L | 21205677..21206471 | 241..1039 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:59 Download gff for
FMO12787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21196183..21196422 | 1..240 | 98 | -> | Plus |
| arm_3L | 21198777..21199571 | 241..1039 | 98 | | Plus |
