FMO12788.5prime Sequence
1147 bp (1028 high quality bases) assembled on 2013-01-29
> FMO12788.5prime
CAGTCGACATGACTCAATCCACGGAGAATCCGGAGAAGAATCGCGAGCTG
ATCAGCGAGGAAAGCATGAAGGATCTGCTCACCAAGCAGCTGGAAGTCGT
TGGCAGTGGCGGGGCATTTGTGTGGGCGATCTTCTTCCTGTGTGTCACTC
CCAATATACTGAACGGATTCCATGTGTCATCCTATACGCTGCTGGGCCAC
CTACCCGATGACCAGTGGTGCGGCATTCCGGAGCTGCAGGACACCAACTG
GACACACGCCCAGAAGCGGGAGATTGTCGCCAAGGGATTGGATTCGGGCG
GTTGCACCGTGTGGGACTGGAACTATGGCCACCTGGCCAAGATGTCCTAC
GAGGCAGCCCTGAACTATACCGGCCATCTGACGCAGATTTCCCCGCCGGC
TGAGGTATCCTGCCGTGTAAAGGGGCAACATGAGTTCGCCCATCCCGAGA
CCACCTTCGTTGCGGACTGGGATCTCACCTGCGACCGGAGCATCCAGCGT
ACCTCCGCCCAGGTTTCCATATCGTTGGGCAAGTTCTGCGGATCCTTCTC
CTTTGGCATCCTGGCCGACAAATTTGGTCGCAAATCCTCATTCACCCTGG
GCGCTGCCTTCTTTATTGTGGGCAGCTTCTTCTGTACCTTCTCGCCCTGG
TACAGCCTCTTCCTGGCCGGACGTTTCGCCCTAGGAGCAGCCTCCTCTGG
TCTGTTCTATCCAGCATTTACCATGATCGTGGAGAACATCTGCTTGAAGC
ATCGTTCCTGGATGTCCATTGCCTTCTCAGCGTCCTATCCGGTGGGCATG
ATCATCCTGGCCATTGTGGGCTACGTCATCCAACCGTGGAGACATCTGCA
ACTGGCTCTCACCATTCCTTCGCTGCTGCTCATTCTGAACTGCTACCTGA
TGAGTGAGTCACCCCGCTGGCTGATCACGAACCAAGATATGATCGCGTCT
ACAGATTCTCTTCAGACAGCCCAGCATTACAAATTCAGCCGCCGTTGCAG
CCCATCTCAAGTCGCCAGCGATAAGAGTCCCTGGAGCCGAAAAGGGATTC
TCTTTTGGAACAGAAACTCAGAATGTTCCTGAAGTCAATCATCGAAGCTG
TATGGCCAACTCAAAGTGCGCAGAAGTATCCTGGCTCGATCTATGTT
FMO12788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6356-RA | 2887 | CG6356-RA | 774..1898 | 8..1123 | 5185 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24286280..24286727 | 124..571 | 2240 | 100 | Plus |
| 3R | 32079331 | 3R | 24287004..24287172 | 727..895 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 24286792..24286946 | 572..726 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 24284728..24284845 | 8..125 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 24287235..24287371 | 896..1026 | 385 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:14 has no hits.
FMO12788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:13 Download gff for
FMO12788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6356-RA | 585..1719 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:04 Download gff for
FMO12788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6356-RA | 764..1898 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:09 Download gff for
FMO12788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6356-RA | 764..1898 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:09 Download gff for
FMO12788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24284718..24284844 | 1..124 | 96 | -> | Plus |
| 3R | 24286281..24286727 | 125..571 | 100 | -> | Plus |
| 3R | 24286792..24286946 | 572..726 | 100 | -> | Plus |
| 3R | 24287004..24287172 | 727..895 | 100 | -> | Plus |
| 3R | 24287235..24287380 | 896..1033 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:04 Download gff for
FMO12788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20112957..20113102 | 896..1033 | 93 | -> | Plus |
| arm_3R | 20110440..20110566 | 1..124 | 96 | -> | Plus |
| arm_3R | 20112003..20112449 | 125..571 | 100 | -> | Plus |
| arm_3R | 20112514..20112668 | 572..726 | 100 | -> | Plus |
| arm_3R | 20112726..20112894 | 727..895 | 100 | -> | Plus |
