FMO12791.5prime Sequence
1101 bp (1026 high quality bases) assembled on 2013-01-29
> FMO12791.5prime
CAGTCGACATGGGAGGTACGTTGGCTCGAAGAACGGATACAGTTATCTCA
GCAATCAATATGAGGATCTGTGTCGTGGCCGCATGTCTCCTAATGGCATC
GCAGGCCACCGGCTACACGATGGATGATCTGTGCCAACAGTGGTCGGGCT
ATGGATACATCGGCAATCCGAGCAACTGCCATGCCTGGGGATACTGCAAG
AACCAGGAGGTTGTGGCCTGGGGCACCTGTCCCAACGGCTTGGTGTTCAA
CGCGCAGGCCGGCAGCTGTGATTACGCTAATACCACGGTGTGCTCCACCA
GTGCCGTTGAGACATGCTCCAACGTCAAATCTCCCATGTATGTGGCCAAT
CCGTTGAACTGCACCGAATACGCCTACTGCGATGGCACAGGCCAAATCTC
CTATGGCGATTGCGGCACCGGCGGCGTCTATTCGGCATCCTCCACAAAAT
GTATATGGGGACCCGCCTGCCCGCAGGACACCATCTGTCGGTTCATGTTG
TCCAACATCTTTGTAGGCGATCCGAACCAGTGCGGCAACTACATCAACTG
CGTCAACGGCTATGGCACTTCCGAAAAATGTTCCAGCACCGCCAATCCCT
ACTATAATAAAGCCACTGGCAACTGCCAGTCGACGAATCCGTGCACCGGC
GAAGATTCAAACAGTGGAAACTCTGACCAGTTCACTGTTGGGCAAACAAA
TGCAACTGCTTGTGACGAAGAAGCTTTTAAAGCAGCAGATCCACTTACTG
TAAATGGGGAATCTGTTGACTATAGGTACGTTTCTGATGGTGTCACCTGC
TATGGGTACTACTACTGTGCAGCAGTAAACGCCACTGGCTATTGAACCAA
TGTCCCACCGGTACCCAATTCATGCTGGCAAGTGCGTTTCGCCAGCCTCC
TTTGTCTGTACCCATAACCGATGTGGGAACGTTACAATCCATTCATGGCA
GATGAGGTTGCAGACTACCCATCTGCTCAGCGATACCGGATCCATGTCCC
ACATGGCGCCGTACTACGACGAGGTGACAATATCTTGCACCACCAATTCC
GAATACGCCATTTGTAAATTCGACGGCTAGTAAGCAGCCTTTCTAGAACA
T
FMO12791.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6933-RD | 1413 | CG6933-RD | 209..1295 | 9..1082 | 4935 | 97.9 | Plus |
| CG6933-RC | 1283 | CG6933-RC | 79..1165 | 9..1082 | 4935 | 97.9 | Plus |
| CG6933-RE | 1377 | CG6933-RE | 214..1259 | 50..1082 | 4730 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20218755..20219665 | 957..50 | 4405 | 99.7 | Minus |
| 3L | 28110227 | 3L | 20220061..20220103 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:26 has no hits.
FMO12791.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:15 Download gff for
FMO12791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RC | 70..1167 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:13 Download gff for
FMO12791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RC | 70..1167 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:15 Download gff for
FMO12791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RC | 70..1167 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:15 Download gff for
FMO12791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20218618..20219663 | 52..1086 | 97 | <- | Minus |
| 3L | 20220061..20220112 | 1..51 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:13 Download gff for
FMO12791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20211718..20212763 | 52..1086 | 97 | <- | Minus |
| arm_3L | 20213161..20213212 | 1..51 | 92 | | Minus |
