FMO12792.5prime Sequence
1025 bp (950 high quality bases) assembled on 2013-01-29
> FMO12792.5prime
CAGTCCACATGTTGCACACGATGCAGCTGCTCCTGCTGGCCACTATTGTG
GGCATGGTCAGGAGCTCGCCGTACACGAGCTATCAGAACCAACGGTTCGC
CATGGAGCCGCAGGATCAGACGGCAGTGGTTGGGGCCAGGGTAACGCTAC
CCTGCCGAGTGATCAACAAACAGGGCACGCTCCAATGGACCAAGGATGAC
TTTGGACTTGGCACGTCCCGGGATCTGAGTGGATTCGAACGCTACGCGAT
GGTGGGCAGTGACGAGGAGGGTGACTACTCCCTGGACATTTATCCAGTGA
TGCTGGACGACGATGCTCGTTACCAGTGCCAAGTGAGCCCAGGTCCCGAG
GGCCAACCAGCCATTAGGTCCACATTCGCCGGATTGACGGTGCTCGTTCC
GCCCGAGGCGCCCAAAATCACACAGGGCGACGTCATCTATGCCACCGAGG
ATCGCAAAGTGGAGATCGAGTGCGTTTCGGTTGGCGGAAAGCCGGCTGCT
GAGATTACCTGGATTGATGGCCTGGGCAATGTCCTTACGGATAACATTGA
GTACACGGTGATACCGCTGCCCGATCAGCGACGCTTTACGGCCAAGTCCG
TCCTGCGATTGACCCCCAAAAAGGAACACCACAACACGAACTTCAGTTGC
CAGGCGCAGAACACGGCGGACCGCACCTATCGCTCGGCGAAAATACGTGT
CGAGGTGAAATATGCCCCCAAGGTGAAGGTGAATGTGATGGGCTCGCTTC
CCGGCGGTGCATGTGGTTCGGTTGGTGGTGCAGCGGTGGCAGTGTCCACA
TGAGCACCGGTTTCCCGTATTGTGTAGCACTCGCAGGTGCGCTTGGAGTG
CCGGGCGATGCGAATCCCAGCGATGTCCGGTACCGCTGGTTCTAACGACG
AACCGATCATCGGCGGCCAGAGACCGAGATGTGATATTCATGTGACTCGC
AAGTTCACGATGCGATTGTCAGTGCGAGGTGCAAATTCCGTGGGCAGATG
AGGACAGCAAATCCCTTGACTTACT
FMO12792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rst-RB | 6251 | CG4125-RB | 539..1563 | 7..1020 | 4685 | 98 | Plus |
| rst-RA | 4818 | CG4125-RA | 539..1563 | 7..1020 | 4685 | 98 | Plus |
| kirre-RG | 4953 | CG3653-RG | 1969..2594 | 99..724 | 705 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2957461..2957957 | 503..7 | 2485 | 100 | Minus |
| X | 23542271 | X | 2957053..2957259 | 708..502 | 1035 | 100 | Minus |
| X | 23542271 | X | 2955959..2956180 | 921..703 | 840 | 96 | Minus |
| X | 23542271 | X | 3129530..3130155 | 99..724 | 670 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:01 has no hits.
FMO12792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:28 Download gff for
FMO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rst-RA | 532..1563 | 1..1025 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:50 Download gff for
FMO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rst-RA | 534..1565 | 1..1025 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:42 Download gff for
FMO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rst-RA | 534..1565 | 1..1025 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:42 Download gff for
FMO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2957057..2957257 | 504..704 | 100 | <- | Minus |
| X | 2955948..2956178 | 705..931 | 95 | <- | Minus |
| X | 2957461..2957962 | 1..503 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:50 Download gff for
FMO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2849981..2850211 | 705..931 | 95 | <- | Minus |
| arm_X | 2851090..2851290 | 504..704 | 100 | <- | Minus |
| arm_X | 2851494..2851995 | 1..503 | 99 | | Minus |
