FMO12794.5prime Sequence
1112 bp (960 high quality bases) assembled on 2013-01-29
> FMO12794.5prime
CAGTCGACATGTCCAATTTGAGCGAAGATTCCTACGATTATGTTTTTGGT
GGTCGACGTAAGACTCCGCCCACAACAACGTCTACACAACTCAAGCTGAC
CTCACCGCCAGTGCGTTTGCGACCCGAAGACGCCTATCGAGGAGCCAACA
TAAACAACGGAAGGTTCTATCGCCACTCCTTCAGCTACGCCCCCAAAAGG
CAGCGCCACTCGAGTCGGGATGATCGAGACCGCGAGTCTAGGTTGAGATG
TCATGGCGAGGATGAGGCCACACTGCGCCAATTGCTGCTCGATTTGCAAA
AGCAAGTTAGCGTGATGAGCATGAATCTGTCAGCGAAACTCGATGAGCTG
CAGCGGGGAGATCGACACCTGGAGACGACGGTCGCCCTGTGCGAAATCCG
CACCCAGCTCCAGGAGCTGACCAAATCCGTGGAGAGCTGCCAGAGCGAGG
TGTCCGAGGTGAAGCGCGACATGGTGGCCATCAAGCACGAACTGGACACC
GTGCAGCAGGTGAAGGAGGAGATCGAGGAGCTGCGCGAATACGTCGATCG
ACTGGAGGAGCACACGCACAGACGGAAGCTAAGACTTTTAGAACAAGGTC
TCACCTTCTTCCTCACCTACTCGATTTTCTCGGCGGTGCTGGGCATGCTG
CAATTCGGCTACAACACCGGCGTCATCAACGCGCCCGAAAAGAATATCGA
GAACTTCATGAAGGACGTCTACAAGGACCGCTACGGCGAGGACATCAGCG
AGGAGTTCATCCAGCAGCTCTACTCGGTGGCGGTATCCATTTTCGAGCGT
CGCCACGCATGCTGGGCGGTTTCAGCGGAGGCTGGATGGCCAACCGCTTT
GGCAGAAAAGGCGGCCTACTGTTGACAATGTGCTCGGTGTTGCCGGCGCC
TGTTTGATGGGATTTACCAAAGTTAGTCATTCCTATGAATGTTATTCCTT
GCCGATTTATATTGTGTATGCGACTCACACTTCGCTGGTGCCCATGTACA
TCTCGGAGAAGCGCCACTGATCTGCGCCGGTGCTTAGACTGTATCATTGG
CTGGTGACTGTAAGTTTACTATTATCCCAAGTGCTGGGCACGGCCAATCT
CGGTACCACGAG
FMO12794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glut1-RX | 5560 | CG43946-RX | 761..1855 | 10..1090 | 4855 | 97.3 | Plus |
| Glut1-RW | 3014 | CG43946-RW | 761..1855 | 10..1090 | 4855 | 97.3 | Plus |
| Glut1-RV | 2913 | CG43946-RV | 761..1855 | 10..1090 | 4855 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 980951..981207 | 597..855 | 1135 | 97.7 | Plus |
| 3L | 28110227 | 3L | 979772..979941 | 293..462 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 974136..974300 | 128..292 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 980052..980192 | 457..597 | 705 | 100 | Plus |
| 3L | 28110227 | 3L | 973823..973942 | 10..129 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 981292..981404 | 852..961 | 385 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:31:43 has no hits.
FMO12794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:10 Download gff for
FMO12794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RG | 948..2069 | 4..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:46 Download gff for
FMO12794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RV | 756..1876 | 4..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:53 Download gff for
FMO12794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RV | 756..1876 | 4..1108 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:53 Download gff for
FMO12794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 973823..973942 | 10..129 | 100 | -> | Plus |
| 3L | 974138..974300 | 130..292 | 100 | -> | Plus |
| 3L | 979772..979937 | 293..458 | 100 | -> | Plus |
| 3L | 980054..980191 | 459..596 | 100 | -> | Plus |
| 3L | 980951..981207 | 597..855 | 97 | -> | Plus |
| 3L | 981296..981408 | 856..964 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:46 Download gff for
FMO12794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 981296..981408 | 856..964 | 94 | -> | Plus |
| arm_3L | 973823..973942 | 10..129 | 100 | -> | Plus |
| arm_3L | 974138..974300 | 130..292 | 100 | -> | Plus |
| arm_3L | 979772..979937 | 293..458 | 100 | -> | Plus |
| arm_3L | 980054..980191 | 459..596 | 100 | -> | Plus |
| arm_3L | 980951..981207 | 597..855 | 97 | -> | Plus |
