Clone FMO12796 Report

Search the DGRC for FMO12796

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:127
Well:96
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32856-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12796.5prime Sequence

347 bp (347 high quality bases) assembled on 2013-01-29

> FMO12796.5prime
CAGTCGACATGCTGCAAACAAATCGAGTCCTTCAAAAAGAGCAGGCTGAA
CTATTTGCTATCCAGAAGAAACTCGACCGAGTGCTCCCCGTCATTCAGGA
GGCATTAAATTCACTAAAGGTAGAGGAGCTGCATCTCAAGTCTCAGGTGG
TGGGCCAGCAGAACCCAAAAACGCAGTGCTCCCCTGGAAGGGATCCCCTC
CACATAGATCTGTCGGTGGAGCAGTCCCCAATCACAACTGTGATGGAGTC
CCATCTCGTCAACAGCCAGCAAATAGATCTGGATCTCGTAAGCCAAATGA
GGCGTTTCGAGGAGGAAGTCGACTCGGATGCAAGCTTTCTAGACCAT

FMO12796.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32856-RB 620 CG32856-RB 168..488 9..329 1605 100 Plus
CG32856-RA 563 CG32856-RA 168..488 9..329 1605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15964810..15965021 329..118 1060 100 Minus
3R 32079331 3R 15965071..15965184 122..9 570 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:38:07 has no hits.

FMO12796.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:51 Download gff for FMO12796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32856-RA 163..495 4..337 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:01 Download gff for FMO12796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32856-RA 163..495 4..337 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:28 Download gff for FMO12796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32856-RA 163..495 4..337 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:28 Download gff for FMO12796.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15964803..15965019 120..337 98 <- Minus
3R 15965074..15965189 4..119 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:01 Download gff for FMO12796.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11790525..11790741 120..337 98 <- Minus
arm_3R 11790796..11790911 4..119 98   Minus