FMO12801.5prime Sequence
797 bp (797 high quality bases) assembled on 2013-01-29
> FMO12801.5prime
CAGTCGACATGATCTACACCACAACACTGATGTCCTCGCGCGGCGGCCTC
ATCGGCTCGCTGATCAACAAAGTCAGGCCCCTAGCAGCCGCCAGCATCAG
CAACACTCCGGCGGTGCCGTCGAAGACCCTGGAGGAGCAGTTGGGCCTGC
CGCCGCGACCAAAGAAACCGCTGACTCCCTACTTTCGCTTCATGCGGGAG
CAGCGGCCCAAGCTGAAGGCTGCCAATCCCCAGATTACCACCGTCGAGGT
GGTGCGCCAGCTGTCTAAGAACTGGTCCGATGCCGATGCGCAGCTGAAGG
AGCGCCTGCAGGCCGAGTTCAAGCGGGACCAACAAATCTACGTGGAGGAG
CGAACAAAGTACGATGCCACACTCACGGAGGAGCAGCGGGCCGAGATCAA
GCAGCTCAAGCAGGACCTCGTTGACGCCAAGGAGCGCCGCCAGCTGCGCA
AGCGGGTCAAGGAGCTGGGGCGACCCAAAAAGCCCGCTTCGGCCTTCCTG
CGATTCATCGCCAGCGAACGTATCAACACTCCGCAGGGCGACAAGCAAAC
CTACCGCGAGTGGCACCAAAAGACCACCGCCAAGTGGACTCGCCTTTCCG
ACTCCGAGAAGGAGGTCTACATGCAGGAGTCGCGCAAGGAGATGGAGCTC
TACAGGAAAGCGATTTCCGTTTGGGAGGAGAAGATGATCCGCCTGGGCCA
CATCGACGTGGTGCGTCACGGAAATCTTATCGATCCACCTGAGCCAAAGC
CCCGCAAGACGCTGGCCTCCAAAGATATAGCAAGCTTTCTAGACCAT
FMO12801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TFAM-RA | 1055 | CG4217-RA | 137..908 | 8..779 | 3860 | 100 | Plus |
| TFAM-RB | 1242 | CG4217-RB | 285..989 | 75..779 | 3525 | 100 | Plus |
| TFAM-RB | 1242 | CG4217-RB | 137..207 | 8..78 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20576145..20576726 | 656..75 | 2910 | 100 | Minus |
| 3R | 32079331 | 3R | 20575498..20575623 | 779..654 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 20576804..20576874 | 78..8 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:18:35 has no hits.
FMO12801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:32 Download gff for
FMO12801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TFAM-RA | 137..922 | 1..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:08 Download gff for
FMO12801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TFAM-RA | 128..913 | 1..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:07 Download gff for
FMO12801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TFAM-RA | 128..913 | 1..787 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:07 Download gff for
FMO12801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20575493..20575621 | 656..787 | 96 | <- | Minus |
| 3R | 20576146..20576724 | 77..655 | 100 | <- | Minus |
| 3R | 20576806..20576883 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:08 Download gff for
FMO12801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16401215..16401343 | 656..787 | 96 | <- | Minus |
| arm_3R | 16401868..16402446 | 77..655 | 100 | <- | Minus |
| arm_3R | 16402528..16402605 | 1..76 | 94 | | Minus |
