FMO12802.5prime Sequence
1120 bp (1027 high quality bases) assembled on 2013-01-29
> FMO12802.5prime
CAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACCATCATCCG
CTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCGCATCCGCA
CTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTTGCCGCCAC
AATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGGGAGCGATA
AACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCCAAGCCAGA
GGAGCTGCCCGACTCTCTGGTGATGCGGCGACCACGTCGCACCCGCACCA
CTTTTACCAGCTCTCAAATAGCAGAGCTGGAGCAGCACTTTCTGCAGGGA
CGATACCTCACAGCCCCCCGACTTGCGGATCTGTCAGCGAAACTAGCCCT
GGGCACAGCCCAGGTGAAGATATGGTTTAAGAACCGTCGGCGTCGTCACA
AGATCCAATCGGATCAGCACAAGGACCAGTCCTACGAGGGGATGCCTCTC
TCGCCGGGTATGAAACAGAGCGATGGCGATCCCCCCAGCTTGCAGACTCT
TAGCTTGGGTGGAGGAGCCACGCCCAACGCTTTGACTCCGTCACCCACGC
CCTCAACGCCCACTGCACACATGACGGAGCACTACAGCGAGTCATTCAAC
GCCTACTACAACTACAATGGAGGCCACAATCACGCCCAGGCCAATCGTCA
CATGCACATGCAGTATCCTTCCGGAGGGGGGCCAGGACCTGGGTCGACCA
ATGTCAATGGCGGCCAGTTCTTCCAGCAGCAGCAGTCCATAATCACCAGC
AGCAACTGCACCACCAGGGCAACCACGTGCCGCACCAGATGCAGCAGCAG
CAACAGCAGCTCAGCAGCAGCAATACCATCACTTTGACTTCCAGCAAAAG
CAAGCCAGCGCCTGTCGCGTCCTGTCAAGGACGAACCGGAGCCGACTACA
CTTCAACAGCTCGTACTAACATGCGATCGGGAATGTCTGGCGCCCACTGC
ATCGGCATCCGCTGTGGACCGAGGCGCTGCCCCCCGGGCTCCGAGGTCTA
CAGCCATTAAAACCCAAGAAATGACGAAAGGTCCGAGTCTGGTGTGCATC
GGCATCGGCGACCTGGCCCT
FMO12802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RD | 2499 | CG1034-RD | 196..1300 | 9..1110 | 5180 | 98.6 | Plus |
| bcd-RG | 2514 | CG1034-RG | 196..1315 | 9..1110 | 5020 | 97.2 | Plus |
| bcd-RF | 2521 | CG1034-RF | 196..1322 | 9..1110 | 4950 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757553..6758419 | 1110..247 | 3700 | 97.9 | Minus |
| 3L | 28110227 | 3L | 27540989..27541647 | 247..903 | 3135 | 99.1 | Plus |
| 3L | 28110227 | 3L | 27850078..27850736 | 247..903 | 3135 | 99.1 | Plus |
| 3R | 32079331 | 3R | 6759107..6759271 | 173..9 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 9..170 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 9..170 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758465..6758548 | 256..173 | 390 | 97.6 | Minus |
| 3L | 28110227 | 3L | 27540860..27540943 | 173..256 | 390 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27849949..27850032 | 173..256 | 390 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:18:41 has no hits.
FMO12802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:32 Download gff for
FMO12802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 207..1321 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:12 Download gff for
FMO12802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1310 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:11 Download gff for
FMO12802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1310 | 9..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:11 Download gff for
FMO12802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6757540..6758416 | 250..1120 | 97 | <- | Minus |
| 3R | 6758472..6758547 | 174..249 | 100 | <- | Minus |
| 3R | 6759107..6759271 | 9..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:12 Download gff for
FMO12802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2583262..2584138 | 250..1120 | 97 | <- | Minus |
| arm_3R | 2584194..2584269 | 174..249 | 100 | <- | Minus |
| arm_3R | 2584829..2584993 | 9..173 | 100 | | Minus |
