FMO12804.5prime Sequence
1115 bp (1019 high quality bases) assembled on 2013-01-29
> FMO12804.5prime
CAGTCGACATGCGGAACAACTTTGCGTTCTACAGCGTCTACACCGGAGGC
GGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTGGCAGCGGC
GGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAACATAGACG
AGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATGGCCACAGC
ACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACGCTAAAGGA
CTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCAGCAGCACC
ATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAACAACTTTAC
CACCAGCAACAGCAGCAGCAGCAGCAGCAACAACATCATCACCACCACAA
CAACTCCACCAGTTCGGCGGGCGGGGACTCCCCGTCGTCCTCGCACGCAC
TGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCCAGCGTGAT
AGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAGCTCGGCAG
CAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTACTCAGACTG
CCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACACAAGCCCAT
CTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAGCAACACCA
GCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAATCAACACC
AGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTCTGCACCAC
TCGAGCTCCTCGGCGGCCACGGCGGCAGCGGTGGCTGCGGCAACGGCGGC
GGTCAATGACACAACAGCTCCTTGGAGGACGGCTACGGATCGCCAAGAGC
AGCCACAGTGGCGGCGGGGGCGGTGTACTCTGCCAGCCTTCCAGCGGATC
GCATACCCAACAGTGCTCCGTGAAACGTTACGCCTCCGAATAACCCATTA
TCGCGGTTCAGAACGATACCTGCTTCGATCCGTAAGCTACGCTACTCTCT
TTCGGAAAGCGCAGATTGGCGTCGGGTGGACCGATGGCTTCCGATGTATA
CGAATGGCGGACCAT
FMO12804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 4459 | CG3992-RA | 1029..2101 | 9..1075 | 4945 | 98 | Plus |
| srp-RB | 4414 | CG3992-RB | 1029..2101 | 9..1075 | 4945 | 98 | Plus |
| srp-RG | 3377 | CG3992-RG | 968..1483 | 566..1075 | 2160 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15995168..15995724 | 9..565 | 2785 | 100 | Plus |
| 3R | 32079331 | 3R | 15999322..15999770 | 562..1007 | 1875 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:18:55 has no hits.
FMO12804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:34 Download gff for
FMO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1023..2078 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:21 Download gff for
FMO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1025..2080 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:18 Download gff for
FMO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1025..2080 | 1..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:18 Download gff for
FMO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15995164..15995724 | 1..565 | 99 | -> | Plus |
| 3R | 15999326..15999773 | 566..1011 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:21 Download gff for
FMO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11820886..11821446 | 1..565 | 99 | -> | Plus |
| arm_3R | 11825048..11825495 | 566..1011 | 97 | -> | Plus |
