FMO12805.5prime Sequence
1113 bp (998 high quality bases) assembled on 2013-01-29
> FMO12805.5prime
CAGTCGACATGGCTGAGTACTGGCAGCAGTTGACCAACGGCGCCGGAGAA
GCGGGACCCGGCAATGAGTCATCCGCCATGGCAGACTGCAACGGAGGTCA
CGAATCGGCGGCAGTGGGTGGTTCCTGCAACAGGCACAGCAACAACAATT
ACGTGAACTTCAATCAGTTCATTATGCAGCACAATCTGGGTGGAGGAGCG
CCCTCGAATGCCACCAGCACTATGCAACATCCGGTGGGCAGCAGCTACAC
TAACTTCTCCCTGGGCGGCGGTGGAGGAGCCTTTGGACTGAACCCACCAG
TGGCATCCGCGAGTACCAGCCACTTTGCAAATGTGAGTCATCAATCTCCG
AATTTTTACTCGCAGGCCATGATCCCAACCTATCAAAATGGCGATGGCAT
CGCTAGAGTCACCGTCACCAGCAGCTATGGGTCGGTCAATCCGAGCAACA
GCAATTTTTCGAGTTTTTACACACCTTTTGGCAATAATCCGTTTGACTTC
AGCGCTTCCAAGCTGCAGGCCTCGGCTCCGGAATTCGTGCCCAATTTCGC
CAAGCTGAGTCTAGAAGAGACACCGGCAGCCGCCACTACGAACGGAAACA
GCACTGCCAGCCTAGAGACTGCCATAAATGAGACGAGACCTAGGACTCTG
CGAGCCCAAGAACCAGCTGAACGAGGAGCTAACAACCAATGCTCGAACCA
TAATTACGAACGGGAGCGTGAGCGGGAACGTGACCGGGACCGGGACAGGG
AAAGAGACCGGGACAGAGACAGGGACAGAGACCGGGACAGAGACCGGGAC
AGGGACAGGGACTCTAGACCCGGAATACGCGACACACGCCGCTCCGACTA
TCGGGACGATCGGGAGGACCGGTACGAAAGAGCGATCGTAGAGGCCGCAA
AGCACAACGCTACGACATCATCGCAGCAACAAACGCAGGGATGACTGTAT
CGCACCCGGACCGCTCAACGGCTTTCCTAGGGCCGTTGACGATTGGAACG
AACCATGGAAGCGCCACCCATCGCCCGAAAAGCAGCCGCACCTGCACCAA
TCTCTCTAAGGGAGTCCCCCGCCTACCCTCGGCGATACGAAAACTACGCA
CGGAAGAACTGTT
FMO12805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stc-RB | 4145 | CG3647-RB | 411..1513 | 9..1093 | 4780 | 96.7 | Plus |
| stc-RD | 4133 | CG3647-RD | 411..1501 | 9..1093 | 4590 | 95.7 | Plus |
| stc-RA | 4124 | CG3647-RA | 411..1492 | 9..1093 | 4455 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15114300..15115010 | 354..1050 | 2715 | 96.1 | Plus |
| 2L | 23513712 | 2L | 15113890..15114234 | 9..353 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:19:01 has no hits.
FMO12805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:34 Download gff for
FMO12805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stc-RB | 403..1469 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:24 Download gff for
FMO12805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stc-RB | 405..1471 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:21 Download gff for
FMO12805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stc-RB | 405..1471 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:21 Download gff for
FMO12805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15113884..15114234 | 1..353 | 98 | -> | Plus |
| 2L | 15114300..15114995 | 354..1035 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:24 Download gff for
FMO12805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15113884..15114234 | 1..353 | 98 | -> | Plus |
| arm_2L | 15114300..15114995 | 354..1035 | 96 | == | Plus |
