FMO12807.5prime Sequence
1138 bp (1022 high quality bases) assembled on 2013-01-29
> FMO12807.5prime
CAGTCGACATGATGAAGCATCCGCAGGATCTGAGTGTCACGGATGACCAG
CAGTTAATGAAGGTGAACAAGGTGGAGAAGATGGAGCAGGAGTTGCACGA
CCCCGAATCGGAGAGCCACATAATGCACGCGGATGCCCTGGCCTCTGCCT
ATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCCTCAGCCCC
AATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGCAGCGAGAA
CTTTGCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGGAGGCGGAA
GTGCCAGCAGTGGCAGCAACAACAACAACAGCATGTTCTCACCCAACAAC
AACTTGAGCGGAAGCGGAAGTGGGACTAACAGCAGTCAGCAGCAATTGCA
GCAGCAACAACAACAGCAATCACCGACGGTCTGCGCCATTTGTGGAGATC
GGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGCTGCAAAGGA
TTCTTCAGGAGGAGTGTCAGGAAAAATCATCAGTACACTTGCAGATTTGC
GCGAAACTGCGTTGTGGACAAGGACAAACGGAATCAGTGCCGCTACTGCC
GGCTGAGGAAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGGTGCAAAAC
GAGCGGGATCGCATTAGCTGCCGCCGCACCTCCAATGACGACCCGGATCC
GGGCAATGGGCTGTCTGTGATTTCCTTGGTTAAGGCGGAGAATGAGTCGC
GTCAGTCGAAGGCAGGCGCTGCCATGGAGCCAAACATTAACGAGGACCTC
TCCAACAAGCAGTTCGCGAGCATCAACGATGTCTGCGAGTCGATGAAGCA
GCAGCTGCTGACCCTGGTGGAATGGGCTAAGCAGATTCCGGGCCTTTAAC
GAGCTGCAGCTGGATGACCAGGTGGCACTGCTACGCGCCCATGCTGGCGA
GCATTTGCCTCCTCGGCCTGTCTCCGTCGTTCGATGCACTTGAAGATGTT
CTCCCTGCTGGAGCAACAATTGGTGGGATCCCAGGCACCGTCAGATCCCC
TTGTGTCGCGAATTGGACATTCTCCCGGGATCGGCGCGGATCATCGATGA
CTGGTGACGCGTCATGAAGAGCGTATCCATAAACTGGA
FMO12807.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hnf4-RE | 3876 | CG9310-RE | 1209..2319 | 8..1119 | 5125 | 98.1 | Plus |
Hnf4-RA | 3307 | CG9310-RA | 640..1750 | 8..1119 | 5125 | 98.1 | Plus |
Hnf4-RB | 2739 | CG9310-RB | 195..1209 | 104..1119 | 4645 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8689814..8690253 | 544..105 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 8689178..8689629 | 995..541 | 2125 | 99.3 | Minus |
2L | 23513712 | 2L | 8704361..8704458 | 105..8 | 490 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 260..425 | 232 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2432 | 290..419 | 224 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 294..425 | 220 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 305..418 | 215 | 66.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6923 | 222..414 | 204 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2526 | 222..427 | 202 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 260..417 | 197 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2962 | 222..418 | 185 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 313..429 | 172 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 222..360 | 162 | 62.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1027..1167 | 290..428 | 159 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2563 | 222..417 | 154 | 57 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 260..353 | 139 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1614 | 303..413 | 136 | 59.5 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7376..7455 | 255..338 | 112 | 65.9 | Plus |
FMO12807.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:36 Download gff for
FMO12807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 636..1746 | 8..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:35 Download gff for
FMO12807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 887..1997 | 8..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:31 Download gff for
FMO12807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 640..1750 | 8..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:31 Download gff for
FMO12807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8689129..8689625 | 545..1044 | 97 | <- | Minus |
2L | 8689814..8690252 | 106..544 | 100 | <- | Minus |
2L | 8704361..8704458 | 8..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:35 Download gff for
FMO12807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8689129..8689625 | 545..1044 | 97 | <- | Minus |
arm_2L | 8689814..8690252 | 106..544 | 100 | <- | Minus |
arm_2L | 8704361..8704458 | 8..105 | 100 | | Minus |