FMO12808.5prime Sequence
1118 bp (1024 high quality bases) assembled on 2013-01-29
> FMO12808.5prime
CAGTCGACATGAGCGCCGCCTCTGAGGTGAACCTGATGTTGCTGCGGTCA
GTGGAGAAGCAGACTGCGCTTTATGATCGTACCGACGAAAACTATAGGAA
GCGCCTGCCGAGTGAGAACGCCTGGGACATGGTTGCCTCCGAAGTTGGAG
AGTCGGTGGAAAAATGCAAGCGACGCTGGCGTCAGCTGCGAAATGACTAT
ACCCGCTGGTGCAACGCCGACGCCAACCGGCGACGAAATGGCCAGCGTCG
TTTGGCTTATCCGCTGGCCGATGAGCTGCGCTTTTTGGACCGCCATCTAA
ACATAGCTGACGACATGGCTGCCGACGATGACCGCAGCGTATCATCGGAC
AAGGACAGGGATAACAATAGAGACAGCGAGGGCGTGGATCATCATGCTCA
GGCGTCATTAAAAGAACGCGCATCATCGACAAGCAAGTTAGTTAAGGAGG
TCAAGCTGGCAAGTCAAGTTCGTAAGGAAAAATCGTCCCAAGACAAGAGA
GAAAATTGGGAAAATCCTGGAGATAAACAGCGATCTAGGAAGAAAAGTGC
TGAAGAGAAGCTGAATGATTTGGAGGAATCGGACGAACCAGAGAAGGTTC
CTGAACTCGATAGTTTTCTGCAGTCTGATAATGAAGACGACGAGTGCATG
GACGAGGAGCACCTAGAAGATCTGGAAGGTTTCGATTTTGACTTGGAACA
ATCGAATCAGGAAAAGGAGTTAACGCCGGAGAAGTCTCTAGAGAAGAATA
ACACCGACTCAACTGTTAGCCAGCCGGAGTTCTTTGTCAAGCAAACCAGA
GATCCTCGTTTGCTAATTATTGGCAGAAAGAATTCGACGTCTTCGTTTGC
TGAATCCAAGCTTCAAAATCTATTTCCGGGGATCCTCTGGAACGGCTATG
GAGATAGTGCGATGAATATGGTAGGATGTGAAAACGCGTCACAGCAGCGA
CACTACTCTCCACCCGACGTCACGTCGCGCAGCCGGTGCATCATTAAGTT
TCGCCTGGCCTAAGGATTTACCGATCGAACCAGCAAGCACACGATGGACG
CCGAATGCACGCAAGAATCTATGGATTTACGCGCTGTTACACAGTTAGGA
CTCCATCGCCTGTGAAAT
FMO12808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stwl-RC | 4233 | CG3836-RC | 178..1308 | 9..1117 | 4820 | 96.6 | Plus |
| stwl-RA | 3653 | CG3836-RA | 178..1308 | 9..1117 | 4820 | 96.6 | Plus |
| stwl-RB | 3429 | CG3836-RB | 102..1084 | 157..1117 | 4080 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14405957..14406838 | 1026..156 | 3735 | 97.3 | Minus |
| 3L | 28110227 | 3L | 14409615..14409762 | 156..9 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:19:24 has no hits.
FMO12808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:36 Download gff for
FMO12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 156..1168 | 1..1004 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:37 Download gff for
FMO12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 172..1184 | 1..1004 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:33 Download gff for
FMO12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 172..1184 | 1..1004 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:33 Download gff for
FMO12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14409615..14409766 | 1..156 | 97 | | Minus |
| 3L | 14405979..14406837 | 157..1004 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:37 Download gff for
FMO12808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14399079..14399937 | 157..1004 | 98 | <- | Minus |
| arm_3L | 14402715..14402866 | 1..156 | 97 | | Minus |
