Clone FMO12809 Report

Search the DGRC for FMO12809

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSfmbt-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12809.5prime Sequence

1120 bp (1001 high quality bases) assembled on 2013-01-29

> FMO12809.5prime
CAGTCGACATGAACCCATCCGAGCTGCGCATGATGTGGATGAGTAGTCAG
TACAACTCGGAGCGCATTACACTGGAGGATGCGGCCACTCTGCTGGGTCA
TCCCACTGTTGGACTCTCTGTCATGGAGGACCTCTCCGCCCATCAGCCAA
CTTTGGACATGAATCCGATGATGAGCCTAATGGGGGGAGATTTCACTGGT
CAAGCGGCGGCGACTGCTGCGGCACTGGGTGTACAGCCGGGCACCCTGAT
TGCCACCAACTCGAACAACCTGTACGGATTTGCCCACATGGGCGGCCTGC
AGCAGCAACTGCTCCAGCAGTCGGCGGCGGCGGCAGTCTTCCAGAACTAT
GCGGAGGCAATGGATAACGATGTGGAGAACGGCATGGTTGGCATGGCCAT
GGAGGCGGTCGTGGACGATGACGACCAAGTGTACGGTCAGAGGGACAATA
ACTTTGATGATAATGGATCCGAGTTGGAGCCCAAGCAAGAGATTATCAAC
ATCGACGACTTTGTGATGATGAACGAGGACAATAATTCGTACGATGGCAC
CGACTTTATGACCTCCTCCGATAAGGACATTTCGCAGTCCTCCTCCTCCT
GCATGGCACAGATGCCCGGAAGCTTGGGCGTCCCTGGAGTCGAGCACGAT
CTTTTGGTTCCACTGCCCGATGGCCTGCTGCACCACAAGCTGCTGGGCAC
AACTCTGGTCCCTGCGATGGGTACGCTAAATGGCAATGCCTTTGGCAACA
TAATGGTCAGCACTGAAAACACATCCAGCAAGCAAATGCAGCGCACCTAT
AGTACGGCCAAGGGAGCCAATTCCACCGCAACCACCGCCACCTGCAGTGC
CTCCACGTCCTCCGCATTGCGATCACAGCGCAGACGCGCAAGATCGAGCC
CGTTAACAGGCCAGGACTGGTGCTGAGACACCCATCGCTACAGGGCAACA
TTGACCCTTCGTGATCCCATAAAAGAAAGATGGCATGCCTGTCTGTAAAC
GTTGTGGCGCCATTGGAGTGAGACACATTTCTCACAAATCGCGAACGTTT
GCAGCAATGGCTGGTGCCCGAGGCGAACTATATTCGTGTACCTAAACACT
GATGGAGGAAACAAGCAACA

FMO12809.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Sfmbt-RD 4765 CG16975-RD 300..1410 9..1108 5010 97.7 Plus
Sfmbt-RC 4846 CG16975-RC 312..1422 9..1108 5010 97.7 Plus
Sfmbt-RB 4777 CG16975-RB 312..1422 9..1108 5010 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13174440..13175277 987..155 3880 98.9 Minus
2L 23513712 2L 13175666..13175813 156..9 740 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:19:27 has no hits.

FMO12809.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:37 Download gff for FMO12809.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfmbt-RB 310..1410 9..1100 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:40 Download gff for FMO12809.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfmbt-RB 312..1412 9..1100 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:34 Download gff for FMO12809.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfmbt-RB 312..1412 9..1100 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:34 Download gff for FMO12809.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13174439..13175276 156..988 98 <- Minus
2L 13175667..13175813 9..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:40 Download gff for FMO12809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13174439..13175276 156..988 98 <- Minus
arm_2L 13175667..13175813 9..155 100   Minus