FMO12811.5prime Sequence
1039 bp (899 high quality bases) assembled on 2013-01-29
> FMO12811.5prime
CAGTCGACATGAACGGTGGTGGTGGAGGAAGTGGAGGAGCAAATGTGAGC
AATGGCTCCAGCACCAATGTAACAGCTGCCGGGAGCACTGGGGGCGGAAG
CGCAGGCGACGAGACTGGTGGAGATGCCAGCTCCAGACGCCAGGCGACTC
GGGTGTTTAAGAAGAGCTCCTCCAACGGCAAGATAACAGTTTACCTTGGC
AAACGGGACTTCGTCGACCATGTCACGCACGTGGATCCCATTGACGGTGT
TGTCTTCATTGATCCAGAGTACGTAAAGGACCGTAAGGTTTTTGGCCAGG
TGCTTGCCGCCTTTCGGTACGGACGTGAAGACCTAGATGTTTTGGGATTA
ACGTTCCGTAAGGACCTGTATCTGGCGCATGAGCAGATCTATCCGCCCAT
GCAGCTGGACCGCCCGATGACCCGGCTTCAGGAAAGGTTAATTAAAAAGC
TGGGGCCGAACGCCCATCCGTTTTATTTTGAGGTTCCGCCCTATTGCCCA
GCCTCTGTGTCCTTGCAGCCGGCTCCTGGAGATGTGGGCAAGTCTTGCGG
AGTAGACTACGAGCTGAAGGCCTTTGTGGGTGAGAACGTGGAGGACAAAC
CCCACAAGCGGAACTCGGTGCGACTAACTATTCGCAAAGTCATGTACGCA
CCATCCAAAGTCGGTGAGCAGCCATCGATCGAAGTAAGCAAGGAGTTTAT
GATGAAGCCAAACAAGATCCATTTGGAAGCTACTTTGGACAAAGAGTTAT
ACCACCACGGCGAATAAATATCGGTCAACGTTCATGTGGCCAACAACTCA
AATCGGACGGTAAAAAGATTACGTATGTGTCCGGCAGTTTGCGGATATTT
GTCTCTTTCGACGGCGCATATAAATCTGTAGTGCAGAATCGAGTCAGAGA
CGATGTCAAGTGGCTCCGGATTTACACTCTCGATGTATTTGAGTGTGCCC
CTATGCAATAATAGATAATGGGCCTTGCTTTGGACGATGCTAAGCATGAG
AACACTATTGCGCTAGAGTCCCATACATCTGCTCAGCGG
FMO12811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krz-RB | 1988 | CG1487-RB | 155..1151 | 9..986 | 4470 | 97.7 | Plus |
| krz-RA | 5281 | CG1487-RA | 155..1151 | 9..986 | 4470 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32051264..32051839 | 584..9 | 2880 | 100 | Minus |
| 3R | 32079331 | 3R | 32049507..32049870 | 933..579 | 1325 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:44:18 has no hits.
FMO12811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:30 Download gff for
FMO12811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 147..1153 | 1..995 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:05 Download gff for
FMO12811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 151..1157 | 1..995 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:53 Download gff for
FMO12811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 151..1157 | 1..995 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:53 Download gff for
FMO12811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32049438..32049869 | 580..995 | 93 | <- | Minus |
| 3R | 32051269..32051843 | 1..579 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:05 Download gff for
FMO12811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27875160..27875591 | 580..995 | 93 | <- | Minus |
| arm_3R | 27876991..27877565 | 1..579 | 99 | | Minus |
